Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00891 ATGTCCGCCGCTAAATTAACCTCATGCGTGGTCATGACAGCTGCTGCGGTGGCTTCCATGTCCACGCTCTCTGATCGCGCGTACGCCGACTCTCCCTTTCGGTTCCCTCTGTTCTCTTCTTCATCACCTTCCAATTCGCCTTCGCCGCCAGACCAGGCTTCTGACTCCAAGTCTGAGCCTCCTGCGCCTGATGAACCCAACAAGTCCGGTTTTGATCCGGAATCGTTAGAAAGAGGTGCTAAAGCTCTCCGTGAAATCAATAGTTCTTCCTACGCCAAACAGGTGTTTGATTTAATGCGAAAACAGGAACAAACTCGCCTTGCTGAGTTAGATGCTGAGAAAGTTCATTATGAACTTATTCAGTCTCAAGCAGATATTGAAAGGCAGCGGAAATTGGCTGAAGAACAACGGAATCTAATACAAGAGCAAGCCCAGAGACAGGCCCAGGTGCTGCGATATGAAGATGAATTGGCAAGGAAAAGAATGCAGACAGATCATGAAGCTCAAAGACGGCATAATGTTGAATTGGTCAAGATGCAAGAGGAGTCTTCTGTAAGAAAGGAGCATGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACCATTAGAGTTAAGGCAATGGCAGAGGCTGAAGGTCGAGCCCACGAAGCAAAATTGACTGAGGATCATAATAGGAGAATGCTTATAGAGCGAATGCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACTTTTAGTCATATTGAAGGTGGTCTGAGGGTCTTACTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCATTAGCTGCAGGAGTATATACAACTAGAGAAGGTGCTAAAGTTACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATCCGAGAATCATCAATGGAAAAGTTTCCGGGTTCAAGGATCATCTCTCAAGCCAAAAATAAAATTTTAAATTATAGTACTTTGGCCAGGGCAGAAAAGCCTATTGGGAGTCAAAATGGTCTTGGAAATGTAATCCTCCATCCATCTTTGCAGAGAAGAATAGAGCATCTTGCACGGGCAACATCTAATACTAAGGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGGCCTCCTGGGACTGGTAAAACCATGGTTGCTAGGGAAATAGCTAGAAAATCGGTATGA 1239 0.4479 MSAAKLTSCVVMTAAAVASMSTLSDRAYADSPFRFPLFSSSSPSNSPSPPDQASDSKSEPPAPDEPNKSGFDPESLERGAKALREINSSSYAKQVFDLMRKQEQTRLAELDAEKVHYELIQSQADIERQRKLAEEQRNLIQEQAQRQAQVLRYEDELARKRMQTDHEAQRRHNVELVKMQEESSVRKEHARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERMQGERDKWLAAINTTFSHIEGGLRVLLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMEKFPGSRIISQAKNKILNYSTLARAEKPIGSQNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSV. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00891 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 411 IPR027417 -
Seca10g00891 412 Pfam ATPase family AAA domain-containing protein 3, N-terminal 54 318 IPR021911 -
Seca10g00891 412 MobiDBLite consensus disorder prediction 162 211 - -
Seca10g00891 412 Gene3D - 333 412 IPR027417 -
Seca10g00891 412 Coils Coil 191 218 - -
Seca10g00891 412 Coils Coil 412 412 - -
Seca10g00891 412 MobiDBLite consensus disorder prediction 162 194 - -
Seca10g00891 412 PANTHER PUTATIVE ATP-ASE 19 411 - -
Seca10g00891 412 Coils Coil 123 146 - -
Seca10g00891 412 Pfam ATPase family associated with various cellular activities (AAA) 390 410 IPR003959 GO:0005524|GO:0016887
Seca10g00891 412 MobiDBLite consensus disorder prediction 36 55 - -
Seca10g00891 412 MobiDBLite consensus disorder prediction 36 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00891 Seca-Chr10 8529929 8536974 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00891 K17681 - gmx:100776095 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00891 10 8529929 8536974 Seca10g00891 10 8529929 8536974 ECH