Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00874 ATGTGGCGGTGTGTCGCTCGTGGACTTCGCAATGGATCAACTCCTAATCACCCACTCAGATCTCCCATTTCTAGATTTTTCTCTAGCGGGGTAAACTCCTCATACACCGTGGTGGATCATACTTACGATGCAGTTGTTGTAGGTGCTGGTGGCGCAGGGTTGAGAGCTGCTATTGGACTTTCAGAACATGGGTTCAATACTGCTTGCATTACCAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGCATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGGGATCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCGGTCATTGAGCTAGAGAATTATGGATTACCATTTTCCCGAACAGAGGATGGAAGGATATATCAGCGTGCATTTGGTGGTCAAAGTTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCCTTGGATCTTTTGATGAATAGTGATGGCAGTTGCCAAGGAGTGATTGCCTTAAATATGGAGGATGGAACACTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGCAGAGCTTACTTTTCCGCAACCTCTGCACATACATGCACTGGAGATGGTAATGCCATGGTTGCACGTGCTGGGCTCCCCCTTGAGGATTTAGAGTTCGTGCAATTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGAACGATATGCTCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAGATCCGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATATCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACGAAGGAACCCATTCCTGTTTTGCCAACAGTACATTATAACATGGGTGGTATTCCCACAAACCATCATGGAGAGGTGGTTCACATTATCGGTGACAATCCAGATGCAGTAGTTCCTGGATTGATGGCTGCTGGCGAGACAGCTTGTGCATCAGTTCATGGCGCCAATAGGCTTGGTGCTAATTCACTTCTGGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCAACAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGCTCATTGCCTACTTCAAAAATTCGATTGAATATGCAACGAACAATGCAAAACAATGCCGCTGTGTTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGCTTCCATGACGTCAAGTTGAAGGACCGGAGTTTAATATGGAACTCCGATTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACAATGCACTCTGCTGAAGCCAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGAAAAGAGATGATGAGAACTGGATGAAGCACACTTTGGGGTAA 1782 0.4501 MWRCVARGLRNGSTPNHPLRSPISRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVHIIGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEINRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRTMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLG. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00874 593 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 31 592 IPR030664 -
Seca10g00874 593 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 31 256 - -
Seca10g00874 593 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 77 86 IPR003952 GO:0016491
Seca10g00874 593 Gene3D - 466 580 - -
Seca10g00874 593 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 43 592 IPR014006 GO:0016627|GO:0022900|GO:0050660
Seca10g00874 593 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 485 592 IPR037099 GO:0016491
Seca10g00874 593 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 271 389 IPR027477 -
Seca10g00874 593 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 281 384 - -
Seca10g00874 593 Gene3D - 43 450 IPR036188 -
Seca10g00874 593 SUPERFAMILY FAD/NAD(P)-binding domain 34 462 IPR036188 -
Seca10g00874 593 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 385 450 - -
Seca10g00874 593 Pfam Fumarate reductase flavoprotein C-term 495 592 IPR015939 GO:0016491
Seca10g00874 593 PIRSF SDHA_APRA_LASPO 32 592 - -
Seca10g00874 593 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 465 581 - -
Seca10g00874 593 Pfam FAD binding domain 43 439 IPR003953 -
Seca10g00874 593 NCBIfam succinate dehydrogenase flavoprotein subunit 40 592 IPR011281 GO:0006099|GO:0016627|GO:0050660
Seca10g00874 593 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 281 384 IPR027477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00874 Seca-Chr10 8386407 8392689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00874 K00234 - gmx:100802169 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00874 10 8386407 8392689 Seca10g00874 10 8386407 8392689 ECH
Seca10g00874 10 8386407 8392689 Seca10g00874 10 8386407 8392689 PCT