Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00856 ATGGAGCCTCCCAAAGCTTTCTTACCTTCGCCATTTTCGTTGCTCTTAATCTTCCTCCTTTCCATTTCCTTATGTGGAGGAGTGAAGGCATCAAGTGAGGAGGTCAAGCCTCATGAGGGACCTGTGGTGGAGAAGGGTGAGAGGACAACCTTACATGTCACTGAATACGGAGAGATCTCTGCTGCTGAAGTCAAGGTGGAACATGGTGCACCACCCTACCATCTTCAGTTCTTCACATTGGACCCAAACTCTCTGTTTCTTCCTGTGCTTCTCCATGCAGATATGGTCTTTTATGTTCATACAGATTTTTTTTTCCACTTTGTTCCAGGAAGCGGAAGGCTGACTTATGCTGATGAAGATGGTCGTGACAGTATCCATTTGCGTGAGGGAGATCTCTGCAGCCTCAGAGAAGGATCTGCTTTCTATATACAGAGCAGTTTGGAGCCAGAGAGGAAGAAACTTAGGATTTATGCAATGTTTACTAATACAGACGATAGCACTTTCGATCCATTAATCGGTGCTTACTCAAGGATCGACAATCTGGTCAAAGGCTTTGATAAGAAAATCATGCAAGCAGCTTTTAAGGTGCCGGAGGATTTGGTTGAAGCAATCACAAACAAGACCGACACACCAGCTATAGTGCATGCAGTTTCTGAGAAGCAAAACACTGTCTGGGAATTGGAGGCTTCGTTTCTAAAAAACTTTTTAGGCATTCAGTCTAACTCCAAGAAAGTGATGAAATATAACATCTTTGATCATGACCCTGACTTCAAAAATCGTAATGGTTGGACCTTAACAGTGACCAAAAAGCAACTAAAATCATTGAAGCATCACCACATTGGATTTCTGATGGTGAATTTGATCGAGGGATCAATATTGGGGCCACATTGGAACCCAATGGCAACAGAGATAGCAGTGGTATTGGAGGGAGAAGGCATGGTCCGAGTAGTATGTGGAAGCAGCAATGATGACAAGACAGAATGCAAAAACATGAGGTTTAAGGTTAAGCAGGGGGATGTTTTTGTGGTGCCTAGGTTTCATCCAATGGCTCAGATGTCATTCAAGAATGAGCCACTTGTTTTTCTTGGCTTCAGCACTGCAGCAGAGAAAAACCATCCTCAATTTGTAGCTGGACCTGGATCAGTGCTTCATAATCTAGACAAACGGATACTGGCTGCCTCTATGGATGTCAGCAAACCAACCATTGAGCAACTTTTAGCTTCTCGGGATGGTTCCATCATTTTCAGGTGCACTTCCTGCGCAGAGGAAGAGGAAAAGATAATGAAGGAAGAAGAAGAGAAGGAAAAGGAGGAGGAAGAGAAGAAAAAGAAAGAGGAAGAGGAGAAGGAAAGAGAGGAAGAGGAAGCTAAAAAGAGAGAAAAGGAGAAGAAAAGAGAGGAAGAGGAAGCCAGAAGAAGAGAGAAAGAGAGGAAAAGAGAGGAGGAGGAAGCTAGAAGACAACAACAAGAGAGGGAAAGGAGGAGAGAAGAAGAGGAAGCTAGGAGAGAAAGGAAAAGGGAAGAGGAAGCAGAGAGTGAAGAAGAAGCAGCTAGAAGACAGAAAGAAAGGAGAGAAGAGGAAGCAGAGAGTGAGGAAGAAGCAGCTAAAAGACAGCAAGAAAAGAGGGAAAGGAGGCGTCAAGAGGAGGAGGCTAGGAGAGAGAGAGAAAGGAGAAGAGAAGAAGAAGAAAGGGAGGAAGCTAGGAAAGAGAGAGAAAGGAGAAGAGAAGAAGAAGCAGAAAGGGAGAAGGAACGAGCTAGAAGACAGCAAGAAAGGAGACGTAGAGAAGAAGAAGAAGAAGAAGCAGAAGCAGAGAGGGAGGAAGAAGCAGCAAGAAGACAACAGGAAAAGAGGGAGAGGGAGAGGACGCGAGAAGAGGAGGAAGCAAGGAGAGAGGAAGAAAGGAGAAGAGAAAAGAAAGAAGAAAGGGAGCAAGAACGATCTAGAAGACAGCGAGAAAGGAGAAGAGAAGAAGGAGAGCCGGAGGAAGAAGCAGCCAGAAGACAACAGGAAGAGAGGGAAGAGAGGCGAGAAGAGGAAGAAAGGGAGAGAGGAGGAGGAAGGAGGCGACATAGAAGGGGGGAGAGGGGAAGAAGCAGAGGGGAAGAAGAAGCAGCAGAATGGGAGGAAGAAGAAGCCAGAAGACAGCAAGAAGAAAGGGAGAGGAGAAGGGAGCGAGATGGTGGTGATGAAGGAAGGAGAGCTTTTAAGGTGTGGGATGTTTGA 2226 0.4555 MEPPKAFLPSPFSLLLIFLLSISLCGGVKASSEEVKPHEGPVVEKGERTTLHVTEYGEISAAEVKVEHGAPPYHLQFFTLDPNSLFLPVLLHADMVFYVHTDFFFHFVPGSGRLTYADEDGRDSIHLREGDLCSLREGSAFYIQSSLEPERKKLRIYAMFTNTDDSTFDPLIGAYSRIDNLVKGFDKKIMQAAFKVPEDLVEAITNKTDTPAIVHAVSEKQNTVWELEASFLKNFLGIQSNSKKVMKYNIFDHDPDFKNRNGWTLTVTKKQLKSLKHHHIGFLMVNLIEGSILGPHWNPMATEIAVVLEGEGMVRVVCGSSNDDKTECKNMRFKVKQGDVFVVPRFHPMAQMSFKNEPLVFLGFSTAAEKNHPQFVAGPGSVLHNLDKRILAASMDVSKPTIEQLLASRDGSIIFRCTSCAEEEEKIMKEEEEKEKEEEEKKKKEEEEKEREEEEAKKREKEKKREEEEARRREKERKREEEEARRQQQERERRREEEEARRERKREEEAESEEEAARRQKERREEEAESEEEAAKRQQEKRERRRQEEEARRERERRREEEEREEARKERERRREEEAEREKERARRQQERRRREEEEEEAEAEREEEAARRQQEKRERERTREEEEARREEERRREKKEEREQERSRRQRERRREEGEPEEEAARRQQEEREERREEEERERGGGRRRHRRGERGRSRGEEEAAEWEEEEARRQQEERERRRERDGGDEGRRAFKVWDV. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00856 741 Gene3D Jelly Rolls 238 419 IPR014710 -
Seca10g00856 741 MobiDBLite consensus disorder prediction 427 741 - -
Seca10g00856 741 Coils Coil 662 683 - -
Seca10g00856 741 MobiDBLite consensus disorder prediction 696 741 - -
Seca10g00856 741 Pfam Cupin 248 401 IPR006045 -
Seca10g00856 741 SUPERFAMILY RmlC-like cupins 53 410 IPR011051 -
Seca10g00856 741 Coils Coil 706 726 - -
Seca10g00856 741 MobiDBLite consensus disorder prediction 427 688 - -
Seca10g00856 741 SMART Cupin_1_3 248 403 IPR006045 -
Seca10g00856 741 Coils Coil 420 656 - -
Seca10g00856 741 CDD cupin_7S_vicilin-like_C 255 412 - -
Seca10g00856 741 Gene3D Jelly Rolls 39 226 IPR014710 -
Seca10g00856 741 CDD cupin_7S_vicilin-like_N 54 220 - -
Seca10g00856 741 PANTHER OS03G0336100 PROTEIN-RELATED 12 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00856 Seca-Chr10 8189001 8192471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00856 54 446 Miscellaneous Gene Families AT4G36700 43.510 1.47e-109 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00856 - - gmx:100780895 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00856 10 8189001 8192471 Seca10g00856 10 8189001 8192471 ECH