Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00784 ATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAAAAATTTACAAGACGCAAGCAATAGGCGAAATATCCTTTGTGATGAACGATTGCGTGCCCTTTTTGGTGTCGATTCCATCAACATGTTCCAAATGAATAAGGCATTGTCAAAGCATATCTGGCCATTGGATTCAGATGATGTTATCCCTGTGAAGTCAGCACCAAAGGAAAAGCAGAAGAAGCAAGAGAGAGAAGATGATCCAGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGGGAAATCGGGCTTTCTTGCTCCTCTACAGCTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGTGAAAGTGAGTTATCAAGAGCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATATTATGTGACGAGAAGCTGAAAGAACTCTTTGAGGTTGACACCTTCAATGGCTTCACTGTTACAAAACTGCTGGCTCCTCATTTTATAAAGACAGAGCAATGA 549 0.4135 MARTEVVKQLWAYIREKNLQDASNRRNILCDERLRALFGVDSINMFQMNKALSKHIWPLDSDDVIPVKSAPKEKQKKQEREDDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGESELSRADVIKRMWDYIKGNNLQDPSDKRKILCDEKLKELFEVDTFNGFTVTKLLAPHFIKTEQ. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00784 182 ProSiteProfiles SWIB/MDM2 domain profile. 100 179 IPR003121 -
Seca10g00784 182 MobiDBLite consensus disorder prediction 69 100 - -
Seca10g00784 182 Gene3D SWIB/MDM2 domain 1 64 IPR036885 -
Seca10g00784 182 ProSiteProfiles SWIB/MDM2 domain profile. 1 58 IPR003121 -
Seca10g00784 182 CDD SWIB-MDM2_like 1 56 - -
Seca10g00784 182 Pfam SWIB/MDM2 domain 104 177 IPR003121 -
Seca10g00784 182 Pfam SWIB/MDM2 domain 1 56 IPR003121 -
Seca10g00784 182 MobiDBLite consensus disorder prediction 69 97 - -
Seca10g00784 182 CDD SWIB-MDM2_like 105 177 - -
Seca10g00784 182 FunFam Upstream activation factor subunit 92 182 - -
Seca10g00784 182 SMART swib_2 1 61 IPR019835 -
Seca10g00784 182 SMART swib_2 101 182 IPR019835 -
Seca10g00784 182 SUPERFAMILY SWIB/MDM2 domain 2 60 IPR036885 -
Seca10g00784 182 Gene3D SWIB/MDM2 domain 95 182 IPR036885 -
Seca10g00784 182 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 69 179 - -
Seca10g00784 182 SUPERFAMILY SWIB/MDM2 domain 98 181 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00784 Seca-Chr10 7491075 7498108 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca10g00784 SWIB 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00784 K15223 - gmx:100786835 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00784 10 7491075 7498108 Seca10g00784 10 7491075 7498108 ECH