Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00572 ATGGCAACCATTCATTTTTCTTCAGCTACGTCTTCTCTCTTCAAATCCGATTTCTCTTCCTCCAAATATCTGGTCGACCTTCCGTTTGAATTTAAGCCCTCAATAAGGAAACGCCAAACTGCAACTCCTAGAATCACCCAAATTACCTCTTCCTCCAATGTCTCTCTTACTCTCGGCAATGCATACTCTTCGTTTGAGGAGCAGTCCAGTTCTTATGGTGTGGATGTGAGGCAGGCAGTGGCAAATTCAGATGCACGTACCAAAACTAAGATCGTATGTACGATAGGTCCATCTACCAGCTCACGTGACATGATATGGAAACTCGCGGAAGCGGGAATGAATGTGGCACGTTTGAACATGTCGCATGGGGACCACTCTTCGCACCAGAAGACTATTGATTTCGTTAAAGAATACAATGCCAAATTTCAACACAAGGTTATAGCAATCATGCTTGATACCAAGACCATTTTGCCTTCCATTACAGTCACATCAACTGAATTTCTTCCTTCGCAGGGTCCTGAAGTTAGAAGTGGGGATGTTCCCCAACCAATTTTTCTTAAAGAGGGGCAACCATTCAATTTCACCATTAGGAGAGGGGTTAGCACAGAAGACACTGTAAGTGTCAATTATGATGATTTTGTCAATGATGTGGAGGTTGGAGACGAACTACTGGTTGATGGCGGAATGATGTCTCTTGTTGTTAAGTCAAAGACAAGAGACTTGGTTAAATGTGAAGTTATTGACGGTGGAGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGAAAAGGACTGGGAAGATATCAAGTTTGGGGTGGACAATCAAGTGGACTTCTATGCTGTATCATTTGTCAAGGATGCTAGAGTGGTTCATGAGTTAAAACACTACCTCAAAAGTAACAATGCTGATATACACGTGATTGTAAAAATTGAAAGTGCGGATTCCATTCCAAATCTTCATTCAATACTTTCAGCTTCAGATGGGGCCATGGTTGCTCGTGGGGACCTTGGAGCTGAACTTCCAATAGAGGAAGTTCCTTTATTGCAGGAGGACATTATTAGAAGATGTCACAGTATGCAAAAGCCAGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTAATCATCCTACACCAACTAGGGCAGAAGTCTCGGACATTGCAATTGCAGTAAGACAAGGCGCTGATGCTATCATGCTTTCCGGAGAAACTGCACATGGAAAATATCCATTGAAAGCTGTTAAAGTTATGCATGCGGTGGCTCTAAGGAATGAATCCAGTGTTCCAAGAAGTGACGCTTATCCTAATCAATTGAGCTCCCACCAAAGCCATATGGGAGGAATGTTTGCTTTCCATGCGACGGTTATGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCTATTCTTTTGAGCCATTACAGGCCCTACTCAACAATCTTTGCATTCACAAATGAAGCAAGGATTAAGCAGAGGCTGGCACTTTATCATGGTGTTATGCCAATATACATGCAATTTTCTAATGATGCAGAGGAGACATTCTCTAGAGCCCTTAAGCTACTATTGAGTCAGGGGTATTTACACGAGGGACAACATGTTACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGATGAATCCACTCACCACATACAAGTTCGTCAGGTTCATGGATAA 1728 0.4219 MATIHFSSATSSLFKSDFSSSKYLVDLPFEFKPSIRKRQTATPRITQITSSSNVSLTLGNAYSSFEEQSSSYGVDVRQAVANSDARTKTKIVCTIGPSTSSRDMIWKLAEAGMNVARLNMSHGDHSSHQKTIDFVKEYNAKFQHKVIAIMLDTKTILPSITVTSTEFLPSQGPEVRSGDVPQPIFLKEGQPFNFTIRRGVSTEDTVSVNYDDFVNDVEVGDELLVDGGMMSLVVKSKTRDLVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVDNQVDFYAVSFVKDARVVHELKHYLKSNNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCHSMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVRQGADAIMLSGETAHGKYPLKAVKVMHAVALRNESSVPRSDAYPNQLSSHQSHMGGMFAFHATVMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNEARIKQRLALYHGVMPIYMQFSNDAEETFSRALKLLLSQGYLHEGQHVTLVQSGAQPIWRDESTHHIQVRQVHG. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00572 575 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 85 438 IPR015813 GO:0003824
Seca10g00572 575 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Seca10g00572 575 Gene3D - 87 432 IPR040442 -
Seca10g00572 575 PRINTS Pyruvate kinase family signature 412 428 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 PRINTS Pyruvate kinase family signature 286 300 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 PRINTS Pyruvate kinase family signature 162 178 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 PRINTS Pyruvate kinase family signature 393 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 SUPERFAMILY PK beta-barrel domain-like 173 264 IPR011037 -
Seca10g00572 575 FunFam Pyruvate kinase 269 434 - -
Seca10g00572 575 FunFam Pyruvate kinase 435 554 - -
Seca10g00572 575 SUPERFAMILY PK C-terminal domain-like 422 573 IPR036918 -
Seca10g00572 575 Pfam Pyruvate kinase, barrel domain 88 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 NCBIfam pyruvate kinase 88 573 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 Gene3D - 173 267 IPR015806 GO:0004743|GO:0006096
Seca10g00572 575 Gene3D - 443 574 IPR036918 -
Seca10g00572 575 PANTHER PYRUVATE KINASE 78 551 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Seca10g00572 575 FunFam Pyruvate kinase 174 267 - -
Seca10g00572 575 Pfam Pyruvate kinase, alpha/beta domain 474 553 IPR015795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00572 Seca-Chr10 5183107 5189211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00572 K00873 - gmx:100776984 854.744