Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00550 ATGGACTCACAGCAGAGTAATCTATTCGATACCGCTTCGCAACCAGACACGGGGAACGACGCCTACACTTTCCTCGAATTTAACACTCAGGGCGAGGATTTCGACTACCCTGAGTTCCGTGACCCGATAAGGTCATCGGTGGCATGGCCCACGCCCTCCGATTCGCTTGCCGACCCATCGGAACGAGGCGGAGCCGGGTCGGACCACCTGTCCGATGCCTCGCCCGTTTCGGCGGCTCCTGGCAGCGCCACGAAAGGCCGTTCGGGAAGCAGCAGCGGGAACAGCCAAATGGTGGATGCACTGGCGACGGGGATGAGTGGGTTGAATTTTGAGGACACTGGGGATGATGATAATTATGAGTATGGCAAAGGAGATTTCACTGAACATGCTTGCCGTTATTGCGGGGTCTCTAATCCAGCGTGTGTGGTGAGGTGCAATGTACCTTCCTGTCGCAAATGGTTCTGTAATTCGCGTGGGAACACTTCTGGATCGCATATCGTGAATCACCTGGTTCGAGCAAAACACAAGGAAGTTTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAACTGCGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCAAAGACAGAAAGTGTAGTTGTCCTTCTTTGTCGCGAACCTTGCTTGAGTGTCAATGCCTTGAAGGACATGAACTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGCAAATAAATAAAGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATACCAGTATCAAAATGTATTTGCACCTCTAATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGATAATGTCACAATCCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCGAAGGAAGATAACGAGCTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCACATCCTGCTTGGCAGTCAGTGGGTCATGTGGTATGCATGGGTGTTATTTTATCTGTAGTGCTGTTTTATACCCTCACTCTTTGTCCTAATACTTCCAACAACACTGTTAATCTAGCTAAATTTAGTAAAAATTTACTATTAGAAGAATTGGGTCGATAA 1302 0.4647 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSSVAWPTPSDSLADPSERGGAGSDHLSDASPVSAAPGSATKGRSGSSSGNSQMVDALATGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVVCMGVILSVVLFYTLTLCPNTSNNTVNLAKFSKNLLLEELGR. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00550 433 MobiDBLite consensus disorder prediction 1 26 - -
Seca10g00550 433 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 123 282 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Seca10g00550 433 Pfam RNA helicase UPF1, 1B domain 334 394 IPR040812 -
Seca10g00550 433 MobiDBLite consensus disorder prediction 1 97 - -
Seca10g00550 433 MobiDBLite consensus disorder prediction 77 97 - -
Seca10g00550 433 Pfam RNA helicase (UPF2 interacting domain) 129 282 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Seca10g00550 433 CDD 1B_UPF1-like 335 392 IPR040812 -
Seca10g00550 433 CDD ZBD_UPF1-like 130 252 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Seca10g00550 433 Gene3D - 335 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00550 Seca-Chr10 4998916 5003441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00550 K14326 - lja:Lj2g3v1987530.1 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00550 10 4998916 5003441 Seca10g00550 10 4998916 5003441 ECH