Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00536 ATGTGCACTCGTACAGAGTTCTGCAAAAAAGAAAAAGTAATGGATTTCTCCGAGAAGGACCTATTCGGCGAAGATTCCGACAACGAACAAGATGGGACCCACTCTTCCTCCCCCTCTTCCTCCTCCGCTTCCTCTTCCTCTTCCTCTTCGTCTTCCTCTTCCGCCTCTTCCTCTAAAGCAAGTGATGCTGCAGCCGACTCCAGCTCCGCCAGCGGAAGCGCCAGCAGCGGCGGTGACGATGACGATGATAATGGCGATGTCGTAGATAGCAGCAGGTCCTACGCTCATCATCATGATGACTATGAAGACAAAGATCTATTTGGCTCTGATACTGAAGATTACAGCAAAACCCTCGCTAAAAGTCCTTACCCTATTCCTGTATTGCCTGCAGCCACCCGCAATGTGAATAATTCGGGTCCGGGTCGAGGGGGGTTTGGCCGTGGTCGTTGGCAGCCTGGGCATGATAGAGGAGCCGGTATTCTGCCACGTCCTGGACCGTATCCTCAGAGGCAGAATTTTGGGTATGGTAATAGGTTTTCAAATGGCCGCCATGATGAAAGATTTGTCTCTGATTTGAAGCTTTCAAAAAGTGAAGAAACTCTGTCAAGGAAGTGCATTGCTTTTCAGGAGCCTTGTGAAATTGGCTGCTATAGTCGTGTAGAAGGTGGAGAAGTATATTTCGACGATCGTAGCTTGAGGCTTTTTAAGCGCCATATCACTGAAGATGTTGGAGCTGATTTGTATGAAGGTTTTGATACATTCATTCCCAAAAAAGACTTGGGCTCGGAGGGATTTGGCGATCTTCTTGCGTGCATTAGAGACAAGAATATTCCGCTTCAAAACATTCATTTTGTGACATTCCGTAACAATCTTAACAAGATACTGGCTACAGCTTACATCCGTCATGAGCCTTGGGAAATGGGAGTGCACAAAAGGAATGGTGTTGTGTATCTTGATGTGCATAAGCTACCGGAAAGACCACAGAGTGAATTAGAACGCAGGAGATGTTATTCGGGTTATTGTTTTGAGACCCTTGCTACTGAAGATCCTAGAAGAGCAGACGGAGAGGGGATACATCATGTCGATGCCAATGTTGAATTCTGTTCTGTGATTAAGACAAAATTAGGAGCTCATCGTATCCTGATGGGTGCTGAGATGGATTGCTGTGATTCGACTAATGATGGGAAGAGATTTTATGTGGAGTTAAAGACAAGTAATGAGTTAAATTATCATACTGAGGAAAGATTTGAGAGAGAGAAACTGCTAAAGTTCTGGATTCAATCATTCCTGGCAGGTGTTCCATATATTGTCATAGGATTTAGGGATGATGCAGGTCGACTTGTTCGGACAGAAAGACTTAGGACTAAAGATATAACACAGAGAGTTAAAATGAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCTTTTGCTGATGAGGTATTATGCTGGCTTTATGGAACAGTCAAAGAAAATGAAGATTACATATTGCAGTTTGCTCATCCTTTCAACCGTTTGGAGCTTCTGCAAGCCCAGTCTTGCCCAGATGTAATTACTAGTCATCTGGAACTGTTGTGA 1575 0.4476 MCTRTEFCKKEKVMDFSEKDLFGEDSDNEQDGTHSSSPSSSSASSSSSSSSSSSASSSKASDAAADSSSASGSASSGGDDDDDNGDVVDSSRSYAHHHDDYEDKDLFGSDTEDYSKTLAKSPYPIPVLPAATRNVNNSGPGRGGFGRGRWQPGHDRGAGILPRPGPYPQRQNFGYGNRFSNGRHDERFVSDLKLSKSEETLSRKCIAFQEPCEIGCYSRVEGGEVYFDDRSLRLFKRHITEDVGADLYEGFDTFIPKKDLGSEGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSELERRRCYSGYCFETLATEDPRRADGEGIHHVDANVEFCSVIKTKLGAHRILMGAEMDCCDSTNDGKRFYVELKTSNELNYHTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFNRLELLQAQSCPDVITSHLELL. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00536 524 PANTHER DOM-3 RELATED 18 512 IPR039039 -
Seca10g00536 524 MobiDBLite consensus disorder prediction 87 111 - -
Seca10g00536 524 Pfam RAI1 like PD-(D/E)XK nuclease 386 448 IPR013961 -
Seca10g00536 524 MobiDBLite consensus disorder prediction 32 78 - -
Seca10g00536 524 MobiDBLite consensus disorder prediction 19 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00536 Seca-Chr10 4739471 4748360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00536 K14845 - gmx:100798780 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00536 10 4739471 4748360 Seca10g00536 10 4739471 4748360 ECH