Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00443 ATGATCATGGCACTTAATTCATTGTCACCACTTTCAATAAATTCCCTCCATGTATCTTCTTCACGTTCCAGTTCCAAGATTTCAAACATACATTCAAAGTCCTTTCCCATTGTCTGCCAAATGAACTCAGATAGAGATCATCCTCAAGAGTCCAAGAAATGGGGAAAATTGGTTTCGGCCACGCTGGCAGCGGCGGTTATTGCCTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAATATGAGGCCGAATTGAGGGGTGAATTTGGGATAGGATCGGCTGCACAATATGGCTCTGCAGACCTCAAGAAAGCGGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACAGCTGCTGATATGAGAGAATCTGATTTTAGCGGTTCAACTTTCAATGGTGCATACCTTGAGAAAGCTGTTGCATACAAGGCAAATTTCACAGGTGCTGATTTTAGTGATACATTGATGGACCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTGTTAGAACAGTCCTCACACGGAGTGACCTTGGAGGTGCCATCATTGAAGGTGCTGACTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAGCAGGGATCAATCTGGCAACTGGAGGTGGAGGTTGAAGCATATTCCTGCCCAATTTCCTGTTTTGTGGAGGCGTTTGCTAGCAAAGTAATTTGTTCAGCCTCAGCCTGCCCATTGGAAACATCTTGGAGCTGA 741 0.4467 MIMALNSLSPLSINSLHVSSSRSSSKISNIHSKSFPIVCQMNSDRDHPQESKKWGKLVSATLAAAVIAFSSDMSALADLNKYEAELRGEFGIGSAAQYGSADLKKAVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFTGADFSDTLMDRMVLNEANLTNAILVRTVLTRSDLGGAIIEGADFSDAVLDLPQKQGSIWQLEVEVEAYSCPISCFVEAFASKVICSASACPLETSWS. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00443 246 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 57 205 - -
Seca10g00443 246 Gene3D - 96 214 - -
Seca10g00443 246 Pfam Pentapeptide repeats (8 copies) 163 198 IPR001646 -
Seca10g00443 246 Pfam Pentapeptide repeats (8 copies) 121 157 IPR001646 -
Seca10g00443 246 SUPERFAMILY Pentapeptide repeat-like 100 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00443 Seca-Chr10 3847091 3852813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00443 - - gmx:100805220 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00443 10 3847091 3852813 Seca10g00443 10 3847091 3852813 ECH