Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00415 ATGGCTGCTGCGCACTTCCATTGCCCGAGTCTGATATTGCAGTCGAAGTCGAATCCTTGTTCGGTTCGTTTGGGTCAGAATTTGACGCTAAAGAATTCATGGTTGGGAACCAAAGTTTGGGTGCAGCCCTTCAGTCTCAGTGTGTCCGTTTGCAAACGCCGCCGCCCCTTCGCTGCCACCGTCTCCTTCAGCCTCCCCACAGCAAAGCCAGAGCGTGTTTCTCCCGGCCAGGAAATTCCCAAATGGTCTTCCAAGGCTATAAAATCATTTGCAATGGGTGAATTGGAGGCGAGAAAACTCAAGTATCCAACTACTGGCACTGAAGCCCTTCTCATGGGGGTTCTTATTGAGGGTACTAATCTAGCTGCTAAGTTTTTGCGAGCCAATGGAATTACACTCTTCAAGGTGCGAGATGAAACCGTGAAGTTACTTGGAAAAGCTGATCTGTTTTTCTTCAGCCCCGAGCATCCTCCACTGACCGATGAAGCTCAGAGGGCCCTTGATTGGGCCGTTGATCAAACAATAAAATCTGGTTTGTTCTTGTCATTTTTTCTCACTTACTGTTGTTTATCACCAATTGCAGAAGAGTGGTGGCAGAGAAATTACCACAGCACACATAATTCTTGGCATTTGGTCTGA 639 0.4757 MAAAHFHCPSLILQSKSNPCSVRLGQNLTLKNSWLGTKVWVQPFSLSVSVCKRRRPFAATVSFSLPTAKPERVSPGQEIPKWSSKAIKSFAMGELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRANGITLFKVRDETVKLLGKADLFFFSPEHPPLTDEAQRALDWAVDQTIKSGLFLSFFLTYCCLSPIAEEWWQRNYHSTHNSWHLV. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00415 212 Gene3D - 81 184 IPR036628 -
Seca10g00415 212 SUPERFAMILY Double Clp-N motif 81 175 IPR036628 -
Seca10g00415 212 ProSiteProfiles Clp repeat (R) domain profile. 79 212 IPR004176 -
Seca10g00415 212 Pfam Clp amino terminal domain, pathogenicity island component 96 145 IPR004176 -
Seca10g00415 212 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 1 178 IPR044217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00415 Seca-Chr10 3624537 3629775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00415 - - gmx:100527844 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00415 10 3624537 3629775 Seca10g00415 10 3624537 3629775 ECH