Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00384 ATGATTCTGCATCCATATTTTATGTCAGAGATTGCAGAAATCTTGAACAAGATTTGCCCTGCATGTAAATCTATTCGGCGTGAATTACGGATCAAGGCTGCTGCATTGATCTCTGGAATCAAGCAGCCTAATGGCTGCAAATATTGTTCTGGAAATGGTATGGATCGTTATCCAACAATGAAATTCAGAGTTTCCTCCAATGATCTGTTCAGAAGAACTGCAATTATTGTTGAAGTAAATGATAAGGCCCCAAAGAAGAAAAAAACTTCAGGGCAAGGATTGCCCGGTGATTATTGGGATTTTATTCCTAGAGATGCTCAACAAGAAGAAAGTTATGTCAATAGAAGGGTTTTATCACCTGCTCAGGTTAATCATTTGCTGAGTGGTGTTGATCCAAACTTTATTGAAAAATTTGTTCCAAGCTTGGATTTTCTTGGTCTCAATTGCTTCCTGGTGACACCAAATTGTCATCGTGTGACAGAACTCCCTCATGTATTTTCGAGTGCAAATCCATTGAGTTTTGATGACAGGACCAGGGCTTGCAAGAAATTGGTTGATTTCAGGGGTACACCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCCAAGCTAAATCCTGATAAAACACCAAGTACTATTTTTACTGATATCCAGCAAAGAAAGGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATGAAAGATGTGGTTCTTGGGAAGCGCAATGATAGTTCATTCCGTACTGTGGTTGTTGGTGATCCAGACCTTGAGCTTAATGAAATTGGTGTACCTTGTCAAATTGCAGAAAGTTTGGAGGTTTCTGAGTATGTGAATAGGCAGAATAAGGAAAAATTGCTTTATTCTTTTGAGCTACTCTTGTTAGAGAAGGGACGTGTACATGTTCGCAGAAAGGGTAAACCACAGGTGCTGTATAAAAAGGAAGATCTACAGATAGGAGACCTATTCTATAGGCCTCTTGCTGATGGTGATAAAGTGTTGATAAATAGGCCTCCTTCCATTCATCAACACTCTATGATTGCTCTCTCGATTAGGGTCCTTCCGATATCTTCTGTAGTATCTATTAACCCACTTTGTTGTTCGCCACTCCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGTCAAAGTGGTAGAAATCTGCTTTCACTTTCTCAAGATAGTTTAACTGCTGCATACTTGCTGATGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGTTTTGCAATAAAAAACTAACACCTCCTGCAATTGTAAAAGCTCCGTCAAGTAATACCTCATTTTGGAGTGGCAAGCAATTGTTCAGCATGCTCTTGCCTTCTAATTTTGACTATTCTTTTCCTTCAAATGGTGTTTTTGTTAGTGATGGGGAGCTTATATCTTCTTCTGAGGCTTCAAGTTGGTTACGTGATTCTGACTGCAATATTTTCCAGAGACTTGTGGAACATTTTCAAGGGAAGACTTTAGACTTTTTGTATGGTGCACAGAAAGTTCTTTGTGAGTGGTTGTCTATGATAGGTTTTAGTGTTTCAATCTCAGACTTGTACCTTTCTTCTGATTCCTATGCACGGAAAAACATGATGGAGGAAATCTCCTATGGCTTACAAGAAGCAGAGCAGGCATGTGATTTCAATCAGTTATTGGTGGATTCTTTTTGTGATTTTCTTTCAGGCAGTCTTCAAGAGAATGAAAATGTTATAGCTGTTGATGTGGATCGTCTGAATTACGAAAGGCAAATATCTGCTGCTCTCAGTCAAGTGTCAGTTGATGCTTTTAGACAAGTTTTTCGCAATATTCAAGGTTTAGCTGATAAATATGCATGTAAGGACAATACTTTCCTTGCTATGTTTAAGGCTGGAAGCAAGGGTAATTTACTGAAAATAGTGCAGCATTCCATGTGCCTTGGACTGCAACATTCTCTGGTTCGCTTGTCATACAGAATTCCCCATGAACTCTCTTGTGCTGCTTGGAATAGTCAAAAGGGGCTTGATTCAATGCGGATGTTTTCTGATACTCTTGAATCTGTCCAGTCTTACATTCCATATGCTGTGGTTGAAAGCTCTTTTCTGAATGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCGGATCTTCCTGGAACGTTGACACGTAGACTTATGTTCTTCATGCGTGATTTATATGACGCTTATGATGGAACAGTGAGAAACTTATATGGTAATCAACTTATTCAGTTTTCTTATGACACTGATGAGGACTCGTCTTGTGATAGCTATTTCCGAGAGGATACTATAGGTGGTGAACCAGTTGGAGCACTTTCTGCTTGTGCGATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAATTAGTCTACTCGAAACATCGCCTTTGCTGAATTTAAAAAATGTCCTGGAGTGTGGTTCAAGGAAAAAAGATGGTGACCAGACTGTGTCTTTATTTTTGTCTGAGAAACTTGGTAAACAGAGAAATGGGTTTGAGTATGCTGCCCTAGAAGTTAAGAATTATTTGGAAAGATTGATGTTCACAAACATTGTTTCTACTGTCATGATAATATATACCCCACAGTCTTGCATCCTAGAAAAATACAGTCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAATTGTAGCAAGAAGAAACTTGAAAGTGCATTCTATCATTGACTCTCTTTACCAGCGATATGACTCCCTGACAAAGGAATCAAAAGTCACCTTTCCCAATTTGAAAATATCAAGCAAGAAGTGTTCTGCAGATTGCATGGCTAAGGAAGGTGGAGATACTTTGGTAGATGAAGATAAGGAGGGTGAAGATTGCATCACTGTCTCAATTGTTGAAAACTCTAAAAATTCGTTGCAACTGGATGCTGTTCGGGATTTGATGATACCTTTCCTTCTAGGAACAGCTATAAAAGGATTTGTTGAGATCAAGAAGATTGATATTCTCTGGAATAATCTGTCAAAAGCATCAAATTCTTATAAGGGTTCTTCTGGCGAACTATACTTGAGGGTTACCATCTCCAGCGACAGTGACAGTAGAAGATTCTGGGGTGTGCTCATAAATCATTGTCACAAGATAATGCCAATGATTGACTGGACACGAAGTCATCCTGACAACATTCATCATTTCTGCTCAGTCTATGGAATTGATGCAGGGTGGCAGTATTTTCTTAATAGTTTGGCATCTGCAACATCTGAAACTGGCAAGTCAGTCCTTTCTAAGCATCTGCATCTTGTTGCCAATAGTCTGTCAGCCAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGGCAAAGAAAACACGCATCTGTTTCATCACCCTTTGTGCAAGCTTGCTTTTCTAATCCTGGCAGTTCCTTTATAAAAGCCGCCAAGTCTGGAGTCATGGATGATCTCCAGGGCAGCCTAGATGCATTGGCTTGGGGAAAATATCTGTCCATGGGGACAAGTGGACAGTTTGATATCATATATTCAGAGAAGGTACCAGAACTTGCCAAGTCTGTAGATGTGTATAACTTGCTAGAAGCCAGTTTTGACCAGCTGGATACTAACATCAGTACCCCTCATTCTCACAACTATTCATCGGACAAATGCAGTTCTGAGTTTAAGTATAAAAATGGTGGCTATGCATTAAAAGAGAGCAAACAGTGGAGAAGCATTTTAAGAAATTTCGTGAGTGCAAATGATATTCAGAAGCTGACTTCTGCATCGAGGTGCATATTGAACAAGTATTCGATTGATGAGCTACTAAGTGATAGTGACAAGTTAACAATGCTGAAGGTTTTGCGTTTTCATCCTCGTAGAAATGAAAAGCTTGGTGACTCTGGACCAAAGGACATAAAGGTTGGATGGCACCCTAAATATAAGGATAGCCGCTGCTTCCATATAGTAAGAAATGACGGGACTGTTGAAGATTTCTCATACCGAAAATGCATTCTTGGTGCTCTTGAGATTGTTGATCCAGAAAAGTTGAAGAGCCAGAAGAAAAAATGGTCGGGAAATGATGACATGTAA 4173 0.3964 MILHPYFMSEIAEILNKICPACKSIRRELRIKAAALISGIKQPNGCKYCSGNGMDRYPTMKFRVSSNDLFRRTAIIVEVNDKAPKKKKTSGQGLPGDYWDFIPRDAQQEESYVNRRVLSPAQVNHLLSGVDPNFIEKFVPSLDFLGLNCFLVTPNCHRVTELPHVFSSANPLSFDDRTRACKKLVDFRGTPNELSSRVLDCLRISKLNPDKTPSTIFTDIQQRKVAENACNSSGLRWMKDVVLGKRNDSSFRTVVVGDPDLELNEIGVPCQIAESLEVSEYVNRQNKEKLLYSFELLLLEKGRVHVRRKGKPQVLYKKEDLQIGDLFYRPLADGDKVLINRPPSIHQHSMIALSIRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMFCNKKLTPPAIVKAPSSNTSFWSGKQLFSMLLPSNFDYSFPSNGVFVSDGELISSSEASSWLRDSDCNIFQRLVEHFQGKTLDFLYGAQKVLCEWLSMIGFSVSISDLYLSSDSYARKNMMEEISYGLQEAEQACDFNQLLVDSFCDFLSGSLQENENVIAVDVDRLNYERQISAALSQVSVDAFRQVFRNIQGLADKYACKDNTFLAMFKAGSKGNLLKIVQHSMCLGLQHSLVRLSYRIPHELSCAAWNSQKGLDSMRMFSDTLESVQSYIPYAVVESSFLNGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDTDEDSSCDSYFREDTIGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKDGDQTVSLFLSEKLGKQRNGFEYAALEVKNYLERLMFTNIVSTVMIIYTPQSCILEKYSPWVCHFHLDKEIVARRNLKVHSIIDSLYQRYDSLTKESKVTFPNLKISSKKCSADCMAKEGGDTLVDEDKEGEDCITVSIVENSKNSLQLDAVRDLMIPFLLGTAIKGFVEIKKIDILWNNLSKASNSYKGSSGELYLRVTISSDSDSRRFWGVLINHCHKIMPMIDWTRSHPDNIHHFCSVYGIDAGWQYFLNSLASATSETGKSVLSKHLHLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFIKAAKSGVMDDLQGSLDALAWGKYLSMGTSGQFDIIYSEKVPELAKSVDVYNLLEASFDQLDTNISTPHSHNYSSDKCSSEFKYKNGGYALKESKQWRSILRNFVSANDIQKLTSASRCILNKYSIDELLSDSDKLTMLKVLRFHPRRNEKLGDSGPKDIKVGWHPKYKDSRCFHIVRNDGTVEDFSYRKCILGALEIVDPEKLKSQKKKWSGNDDM. 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00384 1390 Pfam RNA polymerase Rpb1, domain 3 407 555 IPR007066 GO:0003677|GO:0003899|GO:0006351
Seca10g00384 1390 FunFam DNA-directed RNA polymerase subunit 411 549 - -
Seca10g00384 1390 Gene3D - 1276 1367 - -
Seca10g00384 1390 Gene3D - 240 410 - -
Seca10g00384 1390 CDD RNAP_IV_RPD1_N 2 780 IPR040403 -
Seca10g00384 1390 Gene3D - 553 733 IPR038120 -
Seca10g00384 1390 Pfam RNA polymerase Rpb1, domain 2 244 401 IPR000722 GO:0003677|GO:0003899|GO:0006351
Seca10g00384 1390 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1209 IPR045867 GO:0003899|GO:0006351
Seca10g00384 1390 Pfam RNA polymerase Rpb1, domain 4 627 683 IPR007083 GO:0003677|GO:0003899|GO:0006351
Seca10g00384 1390 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 2 1211 - -
Seca10g00384 1390 Gene3D RNA polymerase ii 277 329 - -
Seca10g00384 1390 Gene3D RNA polymerase Rpb1, domain 3 411 552 IPR042102 -
Seca10g00384 1390 SMART rpolaneu7 143 431 IPR006592 GO:0003677|GO:0003899|GO:0006351
Seca10g00384 1390 Pfam Protein of unknown function (DUF3223) 1293 1365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00384 Seca-Chr10 3374679 3388285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00384 K16250 - gmx:100796185 2202.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00384 10 3374679 3388285 Seca10g00384 10 3374679 3388285 ECH