Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00339 ATGAGGTACGTGAAGCCCTTGCAATTGTTCCAAGATTTGGTGAAGACAACCCAGAAGGAACGCGGAAGGTTGATTGGTTTAGATGTTGGCGATAAATATGTTGGTCTTGCTCTTTCTGACTTTGATAACAAAATTGCTTCACCTTTCAGTGTTTTGGTCAGGAAGAAGAGTAACATTAGTTTAATGGCTTCTGATTTTGAGAGTCTGATATCTAAATATTCCTTGGAGGGATTTGTTGTTGGCATCCCCTATGACAAAAATCGGGTGTCTCGTGATGCGATACAAGTGAAGGTCTTCATTGATCACCTCCATAAAACCAAAGTGCTTGAAGGTCTAAATTATACATATTGGAATGAAAACTTCACGTCACAGAATGTGGAGTTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCATTCCAAGACTATGCTAGACAAGTTTGCTGCTGTAGGAATACTTCAGGTACCTGAACTGAAGTATATGGTATGA 492 0.3943 MRYVKPLQLFQDLVKTTQKERGRLIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKSNISLMASDFESLISKYSLEGFVVGIPYDKNRVSRDAIQVKVFIDHLHKTKVLEGLNYTYWNENFTSQNVELLLKPLNLNHPVHSKTMLDKFAAVGILQVPELKYMV. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00339 163 SMART rnase_8s 22 126 IPR006641 GO:0006139
Seca10g00339 163 SUPERFAMILY Ribonuclease H-like 22 155 IPR012337 -
Seca10g00339 163 Gene3D - 22 157 IPR037027 GO:0006139
Seca10g00339 163 CDD YqgF 24 155 IPR005227 GO:0006364
Seca10g00339 163 FunFam Putative pre-16S rRNA nuclease 21 162 - -
Seca10g00339 163 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 1 155 IPR005227 GO:0006364
Seca10g00339 163 Hamap Putative pre-16S rRNA nuclease [yqgF]. 22 162 IPR005227 GO:0006364
Seca10g00339 163 Pfam Holliday junction resolvase 23 155 IPR005227 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00339 Seca-Chr10 2987354 2992243 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00339 - - lja:Lj0g3v0306549.1 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00339 10 2987354 2992243 Seca10g00339 10 2987354 2992243 ECH