Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00326 ATGGATATGAATGCGCTACCTTTCCCATACTCAGCACCAGCATCCCTCTCTCCATCTCTCCTATCATCCCAACAAAAACGGCTTAAAATCAAACCCAATTCTTGGACAAACACATCCCTATTGATCCAATGCTGCCACAACCAAACCAAACTAGCCAGCAATGGGTCGGCCTCGGCAAGATTTCCAGAGAAGAATCCTGCTATCATCAACCCTGCTACAGCTGTCCCTCCCAGGCCTAGGAGGATAATCCTGGTTAGGCATGGAGAGAGCGAAGGAAACGTGGACGAGAGCCTGTACACGAGGGTGCCTGATCCCAAGATAGGCCTCACTAACAAAGGCAAGGCCCAAGCAGAGGAATGTGGCAATAGAATCAAGAAAATGATTGAGAAAGATGGTGATCACAGTTGGCAACTTTACTTCTATGTCTCCCCTTACAGAAGGACCCTCGAAACTTTGCAACACCTCGCTCGTCCCTTTGAACGATCACGAATTGCTGGCTTCAGAGAAGAGCCTCGCATTCGAGAACAAGATTTCGGTATCTTCTAA 546 0.4817 MDMNALPFPYSAPASLSPSLLSSQQKRLKIKPNSWTNTSLLIQCCHNQTKLASNGSASARFPEKNPAIINPATAVPPRPRRIILVRHGESEGNVDESLYTRVPDPKIGLTNKGKAQAEECGNRIKKMIEKDGDHSWQLYFYVSPYRRTLETLQHLARPFERSRIAGFREEPRIREQDFGIF. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00326 181 CDD HP_PGM_like 81 176 IPR013078 -
Seca10g00326 181 Pfam Histidine phosphatase superfamily (branch 1) 82 180 IPR013078 -
Seca10g00326 181 SUPERFAMILY Phosphoglycerate mutase-like 79 181 IPR029033 -
Seca10g00326 181 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 84 93 IPR001345 GO:0003824
Seca10g00326 181 Gene3D - 78 181 IPR029033 -
Seca10g00326 181 SMART PGAM_5 81 155 IPR013078 -
Seca10g00326 181 PANTHER BROAD-RANGE ACID PHOSPHATASE DET1 77 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00326 Seca-Chr10 2854849 2857013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00326 - - gmx:100800012 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00326 10 2854849 2857013 Seca10g00326 10 2854849 2857013 ECH