Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00316 ATGGAAGATCTCCGAAATTCGACGCTGAAGTTCTTCACCGATCAAGAACTTTGCTATGCCGATATCGTCCCTCCTGCTCAGGTCCGAGCAAGAATTGAAGTGTCGGTGCTCAGTTTTCTCAAAATATTAAATGCATCGAACCCTGCCATCTCAGATTTGCCTTTGATTCAGAGAAAAATGAGCAACAGTCGAGTGAATCATGGCCTGTTGACCGAATTATCATGTGTTTTCCTTTCCCATTCCGTATCTACGAGGTCTCTGATGAGACCTAATGCCGCAAAGGCCTTTGTTAGGGTGTGGAAGATGATGGAGATGTGCTATCAGATATTGCTTCAGGAGAAACGTGTCACCCAGAGAGAGCTATACTACAAGCTGCTCTGTGATTCGCCACATCTATTTCCTTCTCAATCGGATGTCAACAGGACAATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGATACAGTCTTGGAATCATGGCATCTAGTCGAGGACTCATAGCTGGTCGCCTGATTTTGCAGGAACCGGGCAAAGAGGTAGTCGATTGCTCTGTATCTGGATCTTCTGGACTTGCAATTTCTGGTGACTTGAATTTGTTGGAGAACTTGATTCTAAATGCAGATGCGCGGTATGTTATAATTGTTGAAAAGCGGCTCACTGAGGATCGGTTTTTTGATCAAATTCCAAGCATTCTTATCACTGCTAAAGGTTACCCAGATATGGCCACAAGATTTCTTCTTCATCGAATCAGCCGAGCTTTTCCAAACTTGCCAATTTTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTATGCACCTTCAAATTTGGGAGTGTAGGAATGGGCCTAGAGGCATATAGATACGCTTGCAATGTCAAGTGGTTAGGATTGCGAGGGCATGATCTATCCATGCTGCCAGACCAATCTCTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGAGAATTACAAGGAAGAGGTTGCCTTAATGGTTCAGAGCGGAAGGAGAGCTGAAATCGAGGCACTATACTTTCATGGATATGATTATTTAGGGAACACAGTCTCCTTAACTTCAAAGGCTATGGCGGCTTCTTCTATTACAGCATCTTCCATCTCATTCCCATTCAGAATAACCACTAAATCTTCTAATCCATTTCTCTCTTCTTGTTCTTTCCCATATAAACTCCATCTCACACCTGTCTCTGTCTCAACCTCAGCCTCAGCCTCAGGCGCTGCAACTCCCACCACTTCCATCCAAATCAACGAACCCCCAGTCTCCGCCACTCCCTCCAAGGTTCTTCCTTTTCGGGTCGGGCACGGTTTTGACCTCCATCGGTTGGAACCCGGTTACCCCTTAATCATCGGTGGAATTAACATACCCCACGATAGAGGCTGCGAGGCTCATTCCGATGGGGACGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGGCAAATATTTCCGGATTCAGATCCTAAATGGAAAGGTTGTGCCTCTTCGGTCTTCATCCATGAATCTGTGAGGCTTATGCATGAGGCTGGTTATGATATTGGGAATTTAGATGCTACACTGATACTTCAGAGGCCAAAACTGAGCCCACACAAGGATGCTATCAAGGCCAATTTATCTGCACTGCTTGGAGTTGACTCTTCTGTGGTAAATATCAAAGCAAAAACTCATGAAAAGGTAGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTGGTTCTTCTAATGAGGAAATGA 1815 0.4507 MEDLRNSTLKFFTDQELCYADIVPPAQVRARIEVSVLSFLKILNASNPAISDLPLIQRKMSNSRVNHGLLTELSCVFLSHSVSTRSLMRPNAAKAFVRVWKMMEMCYQILLQEKRVTQRELYYKLLCDSPHLFPSQSDVNRTIQDLVALLRCSRYSLGIMASSRGLIAGRLILQEPGKEVVDCSVSGSSGLAISGDLNLLENLILNADARYVIIVEKRLTEDRFFDQIPSILITAKGYPDMATRFLLHRISRAFPNLPILALVDWNPAGLAILCTFKFGSVGMGLEAYRYACNVKWLGLRGHDLSMLPDQSLVPLKPKDLQIAQSLMSSGILQENYKEEVALMVQSGRRAEIEALYFHGYDYLGNTVSLTSKAMAASSITASSISFPFRITTKSSNPFLSSCSFPYKLHLTPVSVSTSASASGAATPTTSIQINEPPVSATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMRK. 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00316 604 SUPERFAMILY IpsF-like 447 603 IPR036571 GO:0008685|GO:0016114
Seca10g00316 604 SUPERFAMILY DNA topoisomerase IV, alpha subunit 93 363 IPR036078 GO:0003677|GO:0005694
Seca10g00316 604 Gene3D - 445 604 IPR036571 GO:0008685|GO:0016114
Seca10g00316 604 PRINTS DNA topoisomerase VI subunit A family signature 136 153 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca10g00316 604 PRINTS DNA topoisomerase VI subunit A family signature 264 280 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca10g00316 604 PRINTS DNA topoisomerase VI subunit A family signature 154 169 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca10g00316 604 PRINTS DNA topoisomerase VI subunit A family signature 231 252 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca10g00316 604 FunFam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 445 604 - -
Seca10g00316 604 Pfam Type IIB DNA topoisomerase 94 159 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Seca10g00316 604 Gene3D - 23 162 IPR036388 -
Seca10g00316 604 Gene3D - 163 372 - -
Seca10g00316 604 CDD MECDP_synthase 449 601 IPR003526 GO:0008685|GO:0016114
Seca10g00316 604 CDD TOPRIM_TopoIIB_SPO 210 362 IPR034136 -
Seca10g00316 604 FunFam Meiotic recombination protein SPO11-2 18 162 - -
Seca10g00316 604 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 448 603 IPR003526 GO:0008685|GO:0016114
Seca10g00316 604 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 26 366 IPR002815 GO:0003677|GO:0003918|GO:0005694
Seca10g00316 604 Pfam YgbB family 448 601 IPR003526 GO:0008685|GO:0016114
Seca10g00316 604 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 482 497 IPR020555 GO:0008685
Seca10g00316 604 NCBIfam 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 449 603 IPR003526 GO:0008685|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00316 Seca-Chr10 2754306 2760465 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00316 K10878 - gmx:100784732 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00316 10 2754306 2760465 Seca10g00316 10 2754306 2760465 ECH