Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00312 ATGGACCCTGGACCACAGATGCCGACTAATGTGACTGGTATGCTTAAATTTGGGACAAACCTTCTTCAAGCTGTTGGTCAGTTCAATGGTCATTATATCATACTTGTTGCCTATATGAGTGTTACACCCTTGCCTGAGCATCCAGTTCTTCAAGATTATGTTCAGCCTGCTGTCACTTCTGTGGATTCAGATATTATTGAGGGTCCATCACAAATCTCACTTAATTGTCCCATAAGCTTTAAACGTATCAAGACTCCTGTTAAAGGGCGTTCATGCAAACATTTCCAGTGTTTTGACTTCGACAATTTCATAAATATAAATTCAAGGAGACCATCCTGGCGCTGCCCCCATTGTAATCAGTATGTCTGCTATGAAGATATTCGTCTTGATCAAAACGTGGTTGAGATCCTGAAAAGTGTTGGTAAGAACATTGTGGAAGTGATTGTCCTTGCTGATGGATCGTGGAAGGCAGTCTTGGAAAATGATGATGATGTGGATAAGACACAGAATAAGGCCCGCAATAGTGAAAAGGAACAGACTGAACCACAGGAATCTACTTGCTCTCCTAGTACTGCTCCCAATGTTTTGGACCTCACCAATGATGATCATTTGGAGATGATAACAGACACTTGTGAAACTACAGATAGAAAACCTTTCCAGGCATCTGTTCCTAGTCAATTTGTCACGCCAAGGTCAACTTCCTCGGGTATGAACTCTACTGGTGTTAATCAAAATGTTGCTGCTCAAATAGAAGATGACTTTTGGTCTGGAGTTTTTATTGCCCGTGGTAGGTCTGATACCCCAGCAGTTGGAGTCTCTGAGCATCCTGTTCTGCCTGATACTGTTTCTCATTCATTTAATCAGGAAGCTGAGGGTCATGACAATAGCCCTACAATGAACTCTGCCCTGCATAATCAATTTTCTGCACCAAACAATTTACAGCTACAGTTGAATTATAATTCAGTTATCAACGAGTATGGGAGGTCATCCTCAATACCAAGACATATTAATAGGACTCCAGTAGCTGTTCAGGCCCTCCCAGTCCAATCTCAGGCATTGGGACCACAGCAAAATTCAGTAACTAATTTGAATTCATTGCTACCCAGCTGTTCCTCTTCTACTACTCATGTGTCTTTGTCCAGCCCAGCCTCTGCAGATGCTTTCAATGCCATACTGAGTGATCCAGAAAGACAGCAACACTTTTCTCGATCCCCACTGAACCTGCCTCAGGTCTCAGGTGTAAATTCATCTGCATTGCAGCGTCACTCAGCAGCACAGAACCGAGTGCCATCCGTTAATACGTCAGCACCAACTCAGTTGCAAAACCCATACAGAACATCTAGCTTTCTGAATGAATTGAGAAATCCACACCTGCAGCAAGCTCTGAATTCCCGGCCACTCCAACCTATGCGATCGTTAAATACCCAACGGCCCCACATCCAGCAAGGTGGTTCGCAAGCTGGGGTTGTTCAAGCAGCAGGAGCTACAGCAAATAGCCAACAAGCCAGGGTTATGACTCCTGCCCAGGTTGCCAGACAAGGTAGTTCTCATGCTGGGATTGTTCAGACGGCTGGAGCTATTGCCAATAGCCAACAAGCTAGGGTTATGTCTGCTGCTACCCAGGCTGCCAGACAGTCACAATCCATTTCAGTTCAAAATCAAACTTCAGCTGACGGTTTCCAGGGGTTATCAGGAGAGCAAAGGGGAAGTGTGGGAGGAACGGTACAATCAGTTTCTAGGCCTGATGAATTATTCAATTCTCAAACACAGCAGAATTGGCGTCCTACTGGGAGAATGCGTGGTAGTCTTGATCTTGAAAGCCGACAGTATCCTGATGCTGTTAGGCAGCGAATAATTGCACCAAGTACACAACCTGTTCAAAGTTCAAGTTCAAGACCACAACCCGTCCGACCAACCGGTGTATCCGGTGTGTCACCCCAACTGGATGTGCTTATTGCAAACAATAGAAATGCTCATAATCATTCTTCGAGTACCTAA 1998 0.4474 MDPGPQMPTNVTGMLKFGTNLLQAVGQFNGHYIILVAYMSVTPLPEHPVLQDYVQPAVTSVDSDIIEGPSQISLNCPISFKRIKTPVKGRSCKHFQCFDFDNFININSRRPSWRCPHCNQYVCYEDIRLDQNVVEILKSVGKNIVEVIVLADGSWKAVLENDDDVDKTQNKARNSEKEQTEPQESTCSPSTAPNVLDLTNDDHLEMITDTCETTDRKPFQASVPSQFVTPRSTSSGMNSTGVNQNVAAQIEDDFWSGVFIARGRSDTPAVGVSEHPVLPDTVSHSFNQEAEGHDNSPTMNSALHNQFSAPNNLQLQLNYNSVINEYGRSSSIPRHINRTPVAVQALPVQSQALGPQQNSVTNLNSLLPSCSSSTTHVSLSSPASADAFNAILSDPERQQHFSRSPLNLPQVSGVNSSALQRHSAAQNRVPSVNTSAPTQLQNPYRTSSFLNELRNPHLQQALNSRPLQPMRSLNTQRPHIQQGGSQAGVVQAAGATANSQQARVMTPAQVARQGSSHAGIVQTAGAIANSQQARVMSAATQAARQSQSISVQNQTSADGFQGLSGEQRGSVGGTVQSVSRPDELFNSQTQQNWRPTGRMRGSLDLESRQYPDAVRQRIIAPSTQPVQSSSSRPQPVRPTGVSGVSPQLDVLIANNRNAHNHSSST. 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00312 665 MobiDBLite consensus disorder prediction 620 641 - -
Seca10g00312 665 CDD SP-RING_PIAS-like 73 120 - -
Seca10g00312 665 MobiDBLite consensus disorder prediction 166 180 - -
Seca10g00312 665 MobiDBLite consensus disorder prediction 414 442 - -
Seca10g00312 665 MobiDBLite consensus disorder prediction 166 197 - -
Seca10g00312 665 MobiDBLite consensus disorder prediction 547 597 - -
Seca10g00312 665 SUPERFAMILY RING/U-box 72 147 - -
Seca10g00312 665 MobiDBLite consensus disorder prediction 181 197 - -
Seca10g00312 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 157 IPR013083 -
Seca10g00312 665 ProSiteProfiles Zinc finger SP-RING-type profile. 61 142 IPR004181 GO:0008270
Seca10g00312 665 MobiDBLite consensus disorder prediction 547 603 - -
Seca10g00312 665 Pfam MIZ/SP-RING zinc finger 72 120 IPR004181 GO:0008270
Seca10g00312 665 MobiDBLite consensus disorder prediction 620 648 - -
Seca10g00312 665 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 3 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00312 Seca-Chr10 2722427 2730667 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00312 K04706 - gmx:100780539 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00312 10 2722427 2730667 Seca10g00312 10 2722427 2730667 ECH