Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00296 ATGCTTATGCACTTACACTCACACAGCTTGCCACGCCCACATTCACTCCCTTCGCTTCCCAAACCATTCACCTTCTCTTCTTTTACTCCCCGTTCTAACACCCATAGCCACCTCACTCTCCAATCTTCACCTTCCATTCTCCGAAATGAAACTAGTATATTGCGAATGCTCCTTTCCACCACTGCTAATAAGCTTCGGGGTACAGGGGGATTCACTCGTGCTTACAAGAATTGTCACAATTCGGGGTCAGATGCTGACAACTCCAATTGGGAATGTGACTTAGCTCCACCAGCTGGCGACAATGGATCCATCGGACTTGTGAAGTTTATGCTATTCTTTGCGTTCCTCACACTTGAAGAGACTTATCCAGCAGCTGCTGCTTCTGATTTTGCCTCTGGTTTGAGTCCAATTCCCTTCTTTGGGGATGTCGGTGACATAAGCACAGGTTTTGCTTCAGCGTTTCTGCTAATATTTTTCTCTGAACTGGGAGACAAGACCTTTTTCATTGCAGCACTGTTAGCAGCTAGGAATTCAGCTGGTGTTGTTTTCATTGGGACGTTTGGCGCACTTGCGGCAATGACTGTCATATCCGTTGTACTTGGACGAACTTTTCATTATGTTGATGAACTCTTGCCATTCAGGTTTGGAGAAACTGATTTACCTATTGATGACATTGCTGCTGTTTGCCTATTGGTATACTTTGGGGTCTCTACCCTGCTAGATGCCTCATCTAGTGATGGACAAAAATCAGATGATGAGCAGAAGGAGGCAGAGCTAGCAGTTTCAGAATTTTCTGGAAATGGTGCTGGGATACTAGCTGCTGCTAGTACAGTTGTTAGCACTTTTCTCTTAGTTTTTGTTGCTGAATGGGGTGATAAATCATTTTTCTCCACAATTGCCCTTGCAGCAGCTTCTTCACCCCTTGGAGTCATAGCTGGATCACTTGCCGGTCATGGTGTTGCAACTTTGCTAGCTGTACTTGGGGGCTCTTTACTGGGGAGTTTTTTGTCAGAGAAGGTTATTGCCTACACAGGAGGCGTTCTCTTTCTCGTCTTTGCTGCAGTAACCTTATTTGAAATTGTTCAATAG 1089 0.4509 MLMHLHSHSLPRPHSLPSLPKPFTFSSFTPRSNTHSHLTLQSSPSILRNETSILRMLLSTTANKLRGTGGFTRAYKNCHNSGSDADNSNWECDLAPPAGDNGSIGLVKFMLFFAFLTLEETYPAAAASDFASGLSPIPFFGDVGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAGVVFIGTFGALAAMTVISVVLGRTFHYVDELLPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDGQKSDDEQKEAELAVSEFSGNGAGILAAASTVVSTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGSLAGHGVATLLAVLGGSLLGSFLSEKVIAYTGGVLFLVFAAVTLFEIVQ. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00296 362 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 145 358 IPR001727 -
Seca10g00296 362 Pfam Uncharacterized protein family UPF0016 152 235 IPR001727 -
Seca10g00296 362 Pfam Uncharacterized protein family UPF0016 280 353 IPR001727 -
Seca10g00296 362 ProSitePatterns Uncharacterized protein family UPF0016 signature. 161 170 IPR001727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00296 Seca-Chr10 2575816 2581066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00296 - - pcin:129322791 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00296 10 2575816 2581066 Seca10g00296 10 2575816 2581066 ECH