Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00282 ATGTCTTCATCCAAAGATGCCGACCCTACCCTAGGTTACCTGACTCGGAAGGACACGGAGGTAAAGCTTCCTAGGCCAACGAGGGTGAAGAACAAAACACCCGCTCCCATTCAAATCACAGCAGAGCAGATTCTTCGCGAGGCTCGGGAGCGTCAAGAGGCTGAGATCCGCCCTCCGAAGCAGAAGATCACCGACGCCACAGAACTTGGTGAGTATCGTCTGCGGAAGAGGAAGGAGTTTGAGGACTTAATCCGACGGGTTCGATGGAATGTAACCGTATGGATCAAGTATGCACAGTGGGAAGAGTCACAGAAAGACTTCAAACGCGCACGCTCTGTTTGGGAAAGAGCCTTGGAGGTGGACTACAAGAATCACACCCTGTGGCTCAAGTATGCAGAGGTGGAGATGAAGAACAAGTTCATAAACCATGCGAGGAACGTTTGGGACCGCGCTGTCACGCTTTTGCCGAGAGTGGATCAGCTGTGGTACAAATACATTCACATGGAGGAGATGCTAGGCAATGTACCTGGTGCGAGACAGGTATTCGAAAGGTGGATGAAATGGATGCCTGATCAGCAGGGATGGCTCTCTTACATTAAGTTTGAGCTGAGGTACAATGAAATTGAGCGAGCCAGAGGGATTTTCGAGCGACTCGTTCAGTGCCACCCGAAGGTTGGGGCTTGGATACGCTATGCCAAGTTTGAGATGAAGAATGGTGAGGTTGTAAAGGCCAGGAATGTTTATGAGAGAGCAGTGGAGAAGCTTGCTGATGATGAGGAAGCTGAGCAGCTATTTGTTGCTTTTGCTGAGTTTGAGGAAAGATGTAAGGAAACGGAGCGTGCAAGATGTATATATAAATTTGCACTTGATCATATTCCCAAGGGAAGGGCAGAAGATTTGTATTGCAAATTTGTTGCCTTTGAAAAACAGTATGGGGACAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAGAAAAAATCCGTTAAATTATGATTCCTGGTTTGACTATATAAGATTGGAAGAAAGTGTGGGGAACAAAGAAAGAACCAGGGAGGTTTATGAGAGAGCCATAGCCAATGTTCCTCCAGCTGAGGAGAAGCGATACTGGCAGCGATATATCTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGTGGAGCGAACAAGAGAGGTATACAGGGAGTGTCTCAACCAGATACCTCACCATAAGTTCTCATTTGCGAAGATATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCAAGGGTGCTCGTCAAATATTAGGAAATGCTATTGGAAAAGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAGATAGAATTGCAGCTTGGTAATATAGATCGATGCAGAAAACTCTATGAAAAGTATTTGGAGTGGTCCCCTGAAAATTGCTATGCCTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGAACGAGCTAGAGCAATATTTGAGCTTGCAATTGCCCAACCAGCATTGGACATGCCTGAACTGTTGTGGAAGGCATACATTGACTTTGAGACTGCTGAGGGTGAATTTGAGAGAGCAAGAGTGCTATATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTATGCAGAATTTGAGGCAACAGCTATGGATAATGAGGATTTAGACTTATCAGAACATGAACAGAAGATGAAATGCATTCAGCGCGCTAGAATTCATTTTGTGCCTGCATCAGGGGTGTTTGAGGAAGCTCTTAACTACTTCAGATCATCAGCTCCAGATTTGAAAGAAGAAAGGGCAATGCTATTGGAGAAATGGCTCAACATGGAGGCTTCATCTGGGGAGCTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGGCAAGTCACCACTGAAGATGGTTCTACTAGAATTGAAGAGTTCATCGACTATTTATTCCCTGAGGAAACTCAGACAACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAGCTGTCTTCTGGTGATGATTAA 2112 0.4479 MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDATELGEYRLRKRKEFEDLIRRVRWNVTVWIKYAQWEESQKDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVPGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERLVQCHPKVGAWIRYAKFEMKNGEVVKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYCKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDVERTREVYRECLNQIPHHKFSFAKIWLLAAQFEIRQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETERARAIFELAIAQPALDMPELLWKAYIDFETAEGEFERARVLYERLLDRTKHLKVWISYAEFEATAMDNEDLDLSEHEQKMKCIQRARIHFVPASGVFEEALNYFRSSAPDLKEERAMLLEKWLNMEASSGELGDVSLVQSKLPKKLKKRRQVTTEDGSTRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSSGDD. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00282 703 Gene3D Tetratricopeptide repeat domain 523 596 IPR011990 GO:0005515
Seca10g00282 703 Gene3D Tetratricopeptide repeat domain 122 321 IPR011990 GO:0005515
Seca10g00282 703 Gene3D Tetratricopeptide repeat domain 322 522 IPR011990 GO:0005515
Seca10g00282 703 Coils Coil 495 515 - -
Seca10g00282 703 Pfam HAT (Half-A-TPR) repeat 207 235 IPR003107 GO:0006396
Seca10g00282 703 FunFam Cell cycle control protein cwf4 482 685 - -
Seca10g00282 703 PANTHER PRE-MRNA SPLICING FACTOR 24 697 IPR045075 GO:0000398
Seca10g00282 703 Coils Coil 572 592 - -
Seca10g00282 703 FunFam Crooked neck pre-mRNA-splicing factor 1 329 481 - -
Seca10g00282 703 SUPERFAMILY TPR-like 81 203 IPR011990 GO:0005515
Seca10g00282 703 MobiDBLite consensus disorder prediction 1 36 - -
Seca10g00282 703 MobiDBLite consensus disorder prediction 11 27 - -
Seca10g00282 703 SUPERFAMILY TPR-like 267 523 IPR011990 GO:0005515
Seca10g00282 703 SUPERFAMILY TPR-like 194 263 IPR011990 GO:0005515
Seca10g00282 703 FunFam Cell cycle control protein 121 325 - -
Seca10g00282 703 SUPERFAMILY TPR-like 526 634 IPR011990 GO:0005515
Seca10g00282 703 SMART hat_new_1 71 103 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 320 352 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 398 434 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 539 570 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 105 137 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 206 237 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 276 310 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 239 274 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 354 388 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 469 501 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 436 467 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 173 204 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 139 171 IPR003107 GO:0006396
Seca10g00282 703 SMART hat_new_1 503 537 IPR003107 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00282 Seca-Chr10 2419676 2428746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00282 K12869 - gmx:100811745 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00282 10 2419676 2428746 Seca10g00282 10 2419676 2428746 ECH