Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00279 ATGGCGTCCCAAGATACAGATGAAAAGACCAGTGAGTCTGCAGTTTCCACGACGATAGCCAATATCGCCGGCAAAGGTGTGAAACCGGCCCCTACTCCTGCGCTTCTCAGTATCTGCAAGTCTCTCGTCGCCGGCGGAGTCGCCGGTGGAGTGTCACGAACAGCTGTGGCTCCTCTAGAGAGATTAAAGATTCTGCTGCAGGTTCTATCCGTTATGGTTCAAAATCGTCACAGTATAAAATACAACGGAACAATTCAAGGCTTAAAATATATATGGAAAACTGAGGGTTTTAGAGGAATGTTTAAAGGAAACGGAACCAATTGTGCTCGTATCGTCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCATCTAAGGGTATTTTATGGCTCCACCAGCGGCAAACTGGAAATGAAGAAGCCCAGCTCACTCCTCTTCTGCGTCTTGGAGCTGGTGCATGTGCAGGAATTATTGCCATGTCTGCAACTTACCCTATGGACCTGGTGCGAGGACGGCTAACCGTACAGACAGAAGGATCTCCTCGTCAATACAGAGGAATGTTTCATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCCCTCGAGCATTGTATAAAGGATGGCTACCTTCAGTTATAGGAGTTATACCGTATGTTGGTCTTAATTTTTCTGTATATGAATCTCTTAAAGACTGGTTGATTCGATCTAAACCACTTGGAATAGCTCAAGACTCTGAGCTAAGTGTGACCACAAGGCTGGCATGTGGGGCTGCGGCTGGAACTGTTGGCCAGACAGTGGCATACCCCCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGCTGGAAAGATGCTTCTTCAGTTGTCGCTGGTGAGGGAAAGAGCAAAGCTGAGTATACTGGGATGGTTGATGCATTCAAGAAAACCGTGCAGTATGAGGGATTTGGAGCATTATACAAGGGCTTAGTCCCCAACTCAGTGAAGGTTGTCTCTTCCATAGCTATTGCTTTCGTGACTTACGAGATGGTTAAGGACATTCTTGGAGTTGAAATGCGGATATCTGACTGA 1068 0.4672 MASQDTDEKTSESAVSTTIANIAGKGVKPAPTPALLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVLSVMVQNRHSIKYNGTIQGLKYIWKTEGFRGMFKGNGTNCARIVPNSAVKFFSYEQASKGILWLHQRQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEGSPRQYRGMFHALSTVFREEGPRALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIRSKPLGIAQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSVVAGEGKSKAEYTGMVDAFKKTVQYEGFGALYKGLVPNSVKVVSSIAIAFVTYEMVKDILGVEMRISD. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00279 355 SUPERFAMILY Mitochondrial carrier 36 342 IPR023395 -
Seca10g00279 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 144 232 IPR018108 -
Seca10g00279 355 FunFam Mitochondrial substrate carrier 34 349 - -
Seca10g00279 355 Pfam Mitochondrial carrier protein 37 127 IPR018108 -
Seca10g00279 355 Pfam Mitochondrial carrier protein 246 347 IPR018108 -
Seca10g00279 355 Pfam Mitochondrial carrier protein 144 235 IPR018108 -
Seca10g00279 355 Gene3D Mitochondrial carrier domain 35 349 IPR023395 -
Seca10g00279 355 PANTHER SOLUTE CARRIER FAMILY 25 37 349 - -
Seca10g00279 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 247 346 IPR018108 -
Seca10g00279 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 36 128 IPR018108 -
Seca10g00279 355 PRINTS Mitochondrial carrier protein signature 41 54 IPR002067 GO:0055085
Seca10g00279 355 PRINTS Mitochondrial carrier protein signature 54 68 IPR002067 GO:0055085
Seca10g00279 355 PRINTS Mitochondrial carrier protein signature 103 123 IPR002067 GO:0055085
Seca10g00279 355 PRINTS Mitochondrial carrier protein signature 256 278 IPR002067 GO:0055085
Seca10g00279 355 PRINTS Mitochondrial carrier protein signature 205 223 IPR002067 GO:0055085
Seca10g00279 355 PRINTS Mitochondrial carrier protein signature 159 177 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00279 Seca-Chr10 2405988 2415257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00279 19 350 EF-hand Containing Proteins AT5G51050 36.747 3.03e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00279 K14684 - gmx:100784834 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00279 10 2405988 2415257 Seca10g00279 10 2405988 2415257 ECH