Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00275 ATGCTTCTCTGGATGATTTCTACATTCTATGTATTTTCCCCTGAATCTGTGAAGGTTCATGAAGGAAGCATCGTGAAGATTGCTTGGGGTCCGCCAGAGCATGGTGATGCAGTTGCATGTATTTCTGCCGATGGAATTGTGTCATTGTTGGAGGAGGTTGTGGAAGATTCACAGCCTCTTCAGTGGAAGATATGCAAAAGCTTTGGAAGCAGTTCAAGCAAAGTCCTTGATGTTCAATTCGGAATTTCTTTGACTAGATTGAAAATGGTTGCTGCATATTCAGATGGTCATGTGAGAGTTTTTGAGCTCTTGGATCCCTTGGAACTGAGAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATTGAGTCCGTGTCTGCATTTGGAAAGGCTTTGTGCCTCTCTGCATCAATATCTTTGAATCCACAAAAAGGTGGAAGCCAGGAATCCAGCTTCCTTGTAGGTTTTAATTCAAATACACCAGAGCTTAATTCTTCCAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTGGCAGAGTTGGCACTGCCTGAGGACAAGGGTGATCAGGTTTATGCTGTCGCATGGGCACCAAATATTGGAAGACCGTATGAGATCATTGCGGTTGCAACTCACAAGGGACTTGCAATATGGCACCTTGGATTGGACCCTGATCATAATGGGAGACTCCCAGTAGAGAGAGTTGCACTGCTGTCAGGTCATGAAGGCGTGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACGTTGGCTACCACAGGTCACGATGGAATGGTTCGATTATGGCAGTCTAATCTCAATGGCGTTTGGCATCAGCAGGCTGCGTTTGAACCCACTTCTTAG 873 0.4536 MLLWMISTFYVFSPESVKVHEGSIVKIAWGPPEHGDAVACISADGIVSLLEEVVEDSQPLQWKICKSFGSSSSKVLDVQFGISLTRLKMVAAYSDGHVRVFELLDPLELRNWQLQAEFQNVIESVSAFGKALCLSASISLNPQKGGSQESSFLVGFNSNTPELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRPYEIIAVATHKGLAIWHLGLDPDHNGRLPVERVALLSGHEGVVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAAFEPTS. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00275 290 SMART WD40_4 61 102 IPR001680 GO:0005515
Seca10g00275 290 SMART WD40_4 13 51 IPR001680 GO:0005515
Seca10g00275 290 SMART WD40_4 177 222 IPR001680 GO:0005515
Seca10g00275 290 SMART WD40_4 234 273 IPR001680 GO:0005515
Seca10g00275 290 Gene3D - 3 287 IPR015943 GO:0005515
Seca10g00275 290 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 273 IPR001680 GO:0005515
Seca10g00275 290 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 15 288 IPR037363 GO:0005198
Seca10g00275 290 SUPERFAMILY WD40 repeat-like 9 273 IPR036322 GO:0005515
Seca10g00275 290 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00275 Seca-Chr10 2374162 2377469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00275 K14299 - gmx:100780788 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00275 10 2374162 2377469 Seca10g00275 10 2374162 2377469 ECH