Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00181 ATGGTTAGTGTAGCTGACATCCGCAAGGCTCAAAGAGCAGAAGGCCCGGCGACCATCCTGGCTATTGGCACTGCAACTCCACCAAACATAGTGGAACAGAGCACATATCCTGATTTTTACTTCAGAATCACAAACAATGAACACAACACCGACCTCAAAGAAAAATTTCGACGCATTTGTGAAAAGACCATGATTAAGAAGCGATATATGTACCTGACAGAAGATATTTTGAAAAAGAACCCTAATATTCGTGCTTATATGGCACCTTCTTTAGATGCCAGGCAAGACATGATGATTGTAGAGGTACCTAAGCTAGGGAAAGAGGCTGCAACCAAGGCTATAGAAGAATGGGGCCAACCAAAGTCCAACATTACTCACTTAATTTTTTGCACCACGGCTGGTACTGACATGCCCGGTGCAGATTATCAACTTACAAAACTCCTAGACCTTCGCCCATGTGTGAAGAGATACATGATTTACCAGCAAGGATGTTTTGCAGGAGGCACGGTGCTTCGTTTGGCCAAAGACTTGGCCGAGAACAATAAAGGTGCACGAGTACTAGTTGTTTGTTCTGAGATTACTGCATTCATATTTCGTGGCCCCAGTGAAACTCACCTAGATAGTCTTGTGGGGCAAGCATTGTTTGGAGATGGAGCAGCTGCAATCATTGTTGGTTCTGATCCGATGTTAGAAATTGAGAAACCTTTATTTGAACTAGTTTGGACTGCACAAACAATCGCTCCAAATAGTGAAGGAGCCATTGAACTTCACATTCGTGAAGCTGGGTTAACATTCCATCTTCATAAAGATGTCCCTATGATTGCCTCAAAGAACATTGAAAAAGCATTGGTTGAGGCTTTCCAACCATTAGGCATATCTGATTATAATTCAATCTTTTGGATAGCACACCCTGGTGGACCAGCAATTCTAGACCAAATTGAGCAAAAGTTAAAGTTGAAATCTGAAAAGATGAAGGCCACAAGAGAGGTGCTTAGTGAATATGGTAACATGGCAAGTGCATGTGTCTTATTCATCTTAGATGAGATTAGAAAGAAGTCGATTAAGGATGGACTTAAGACCACTGGTGAAGGGTTTGAATGGGGTGTGTTATTTGGTTTTGGACCTGGATTTACTATTGAAACGGTTGTTCTACGAAGTGTTGCTATATAA 1170 0.4179 MVSVADIRKAQRAEGPATILAIGTATPPNIVEQSTYPDFYFRITNNEHNTDLKEKFRRICEKTMIKKRYMYLTEDILKKNPNIRAYMAPSLDARQDMMIVEVPKLGKEAATKAIEEWGQPKSNITHLIFCTTAGTDMPGADYQLTKLLDLRPCVKRYMIYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAFIFRGPSETHLDSLVGQALFGDGAAAIIVGSDPMLEIEKPLFELVWTAQTIAPNSEGAIELHIREAGLTFHLHKDVPMIASKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQIEQKLKLKSEKMKATREVLSEYGNMASACVLFILDEIRKKSIKDGLKTTGEGFEWGVLFGFGPGFTIETVVLRSVAI. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00181 389 Coils Coil 310 330 - -
Seca10g00181 389 FunFam Chalcone synthase 1 236 388 - -
Seca10g00181 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Seca10g00181 389 FunFam Chalcone synthase 2 1 235 - -
Seca10g00181 389 CDD CHS_like 16 384 - -
Seca10g00181 389 Gene3D - 236 389 IPR016039 GO:0016746
Seca10g00181 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Seca10g00181 389 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Seca10g00181 389 Gene3D - 1 235 IPR016039 GO:0016746
Seca10g00181 389 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Seca10g00181 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 5 387 IPR011141 GO:0009058|GO:0016747
Seca10g00181 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Seca10g00181 389 Pfam Chalcone and stilbene synthases, N-terminal domain 6 228 IPR001099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00181 Seca-Chr10 1666152 1668060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00181 106 387 Miscellaneous Gene Families AT3G52160 27.797 6.69e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00181 K00660 - gmx:100170701 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00181 10 1666152 1668060 Seca10g00181 10 1666152 1668060 ECH