Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00055 ATGGAGGGAAGCGAAGGCGGAAGCAATGGCGATGGTGGAGATGGTGCTCGTCCATGGCAGTCGTACCACACTGTTTACACAATCGCCAAAGCAGGAATGGAAAGGGTTGACAAGGAGAAAGTACAAAGGATAGTGTATGAAATGAGCAAAGGATCTAAATATTTCCAGAACGAGGAAAAGAAAGAGGCTTTGATTCGGCAGAAAATCCACAACTTGCGACTTCAGTGTGCAAAGCTTACACAAGCAGACTTATCCCATTATCAGAAGGTTGCTGATAGAAGAATTCTTGACCTAGAAGCTTCACGTGACCTTTCAAGGATTTGGTTACATGTAGACATGGATGCTTTCTATGCAGCAGTTGAGACTTTATGCAACCCTACATTGAAGGGCAGGCCAATGGCTGTTGGTAGCATGTCTATGATATCCACTGCCAATTATGAGGCCCGGAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACAGATTTCAAAAAATATAATTATTACAGTGATTTGACTAGAAAAGTTTTTCAGAGATATGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAAAAAAAGGAACACCAAAAGTGAAGAAATTGCTCAAGAACTCAGAGCCAGTGTTTATGAAGAGACTGGTCTCACATGCAGTGCTGGAGTGGCACCAAATCACTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAATATGTTTTACCAAATGAACGTGTGGCTATTATGGCCTTCATATCCTCCCTACCCATCAGAAAGATTGGGGGCATTGGTAAGGTCACTGAAAATATTTTGAAGGAAGTCTTTGGAATTAACACGTGTGAACAGATGCTGGAGAAGGCTAGCTACCTGGGTGCTCTTTTTTCTCAGTCAACAGCAGATTTCTTTTACTCTGTGGGTTTAGGTCTTGGGAAGACAGATTCTCCCCAAGTCAGATTTCGGAAAAGTATAAGTAATGAAAGGACATTTTCTGCCACTGAGGATGAAGTGCTGCTGTATAAAAGATTGGCGGAGCTTGCTGAAATGCTGTCTGCTGACATGCAAAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACTAGAGCTGTGACTTTACAAAAGTACATCAGCTCAAGTGAGGATATTTTGAAGCATGCATCAAATTTGCTAAAGGCCGAACTTCCTATTTCAGTAAGATTGATAGGCCTCAGAATATCACAGTTTAATGGAGACAAGTGTGGTGATACGTCTGATCCTACACAGACGACTATTACCAGCTTCATTACTTGTGGAGAAGCCAATAAGAAATATAGTTCTTCTCCAGATGTTACAGATCATGACCTTGTCGGTGATACAGAAACTGAACTTTCCCTTGACAATCGGCAGACAAGTCAGCATGATTGCATAGATCTTTTTGATGGTAATCATTCATTAGATGTAGATTACCAAAGCTGCACTGTCTGGAAAAATGATAGTGCAGAGGAGGTGCAAACGTCCAGCAATGATGCTACAAGTTCTAACTACAATGGATATAGAGAGGAGCTGGGACCAACTTCTTTTCAGGGGCAGTTTGAGGTCATAAATGTGAATAATGGGTCTAAATCTAATCGCCTGGAGGATGAGAGACCTAGTTCTTCTTGTCAGGAAACGACAATGTTGTGGGTGAATGATTACAAATGTTCACTCTGTGGAATAGAACTTCCTCCAAGTTTTGTTGAGGAAAGATTAGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAAACATCTGTTCCGAGTCAGTGTCGGGATCAGAAGTATAGAGTCACTGGAAAAAGCAAATCCAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCAGAAAGGATGGAAAACAAGAAAGAGACAGAGTGACAACCAGTGCTAATGGAGACCAGAGACAACACCACCTGCTGCGTGAAGCCCCTTTCGCACATCATTCTTCTGTGGCTCTGCCTCTCCACAAGGATCTTCAGCATGATGAACGAGGTAGTGCTTGGAAGGTTGGTGGAAGCTCTGGTCAAAGGAAAACTGGTGAGCGTGGATGGTGGAAGGACTTCAGGAATCAATATAATGAAAAGGCAGAGACACGCCAAGTTAGAGAGCAGAGGGATGAGAAATCACAAACTAAACCAGATGATAATACTTTTGAGAGGAGAGATGGTTTTTCTGAAAGAAAAGTTGATCCACCTCCTACCTCGAGGAAAAGGCCTTCTTTCAGGGAGAAGAAGATTCTAGTGGAGTCAGGAGATGCTAATCCGGCTGCAACAGTGGCAGTAAAGTCAAGCCAGATTGACCACCCTCCAGTGAGGAATGAAAGGAAGGAGGAAAGAAGCAGCAACCCACACCATTTGCATAGACCTGAGAAGCAATTTACAGGTGACAGAGCACCCCACAAGGGTGAAGCTAGGAGAGATGGTTTCCCATCAAAGAGGAAAGTATAG 2580 0.4295 MEGSEGGSNGDGGDGARPWQSYHTVYTIAKAGMERVDKEKVQRIVYEMSKGSKYFQNEEKKEALIRQKIHNLRLQCAKLTQADLSHYQKVADRRILDLEASRDLSRIWLHVDMDAFYAAVETLCNPTLKGRPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYNYYSDLTRKVFQRYDPNFIAGSLDEAYLDITEVCKKRNTKSEEIAQELRASVYEETGLTCSAGVAPNHLLAKVCSDINKPNGQYVLPNERVAIMAFISSLPIRKIGGIGKVTENILKEVFGINTCEQMLEKASYLGALFSQSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFSATEDEVLLYKRLAELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASNLLKAELPISVRLIGLRISQFNGDKCGDTSDPTQTTITSFITCGEANKKYSSSPDVTDHDLVGDTETELSLDNRQTSQHDCIDLFDGNHSLDVDYQSCTVWKNDSAEEVQTSSNDATSSNYNGYREELGPTSFQGQFEVINVNNGSKSNRLEDERPSSSCQETTMLWVNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESRIHQTSVPSQCRDQKYRVTGKSKSKKQKLSQKEGRKDGKQERDRVTTSANGDQRQHHLLREAPFAHHSSVALPLHKDLQHDERGSAWKVGGSSGQRKTGERGWWKDFRNQYNEKAETRQVREQRDEKSQTKPDDNTFERRDGFSERKVDPPPTSRKRPSFREKKILVESGDANPAATVAVKSSQIDHPPVRNERKEERSSNPHHLHRPEKQFTGDRAPHKGEARRDGFPSKRKV. 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00055 859 Gene3D - 125 173 - -
Seca10g00055 859 Gene3D - 113 263 IPR043128 -
Seca10g00055 859 Hamap DNA polymerase IV [dinB]. 105 457 IPR022880 GO:0003887
Seca10g00055 859 Gene3D - 342 446 IPR036775 GO:0003684|GO:0006281
Seca10g00055 859 FunFam DNA polymerase kappa 249 337 - -
Seca10g00055 859 FunFam DNA polymerase IV 341 448 - -
Seca10g00055 859 MobiDBLite consensus disorder prediction 724 793 - -
Seca10g00055 859 FunFam DNA polymerase kappa subunit 25 115 - -
Seca10g00055 859 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 19 657 - -
Seca10g00055 859 MobiDBLite consensus disorder prediction 622 680 - -
Seca10g00055 859 Pfam impB/mucB/samB family 111 255 IPR001126 GO:0006281
Seca10g00055 859 Pfam impB/mucB/samB family C-terminal domain 344 448 IPR017961 GO:0003684|GO:0006281
Seca10g00055 859 ProSiteProfiles Zinc finger UBZ3-type profile. 586 623 IPR041298 -
Seca10g00055 859 MobiDBLite consensus disorder prediction 709 859 - -
Seca10g00055 859 FunFam Polymerase (DNA directed) kappa 118 170 - -
Seca10g00055 859 ProSiteProfiles UmuC domain profile. 108 288 IPR001126 GO:0006281
Seca10g00055 859 CDD PolY_Pol_IV_kappa 109 441 IPR022880 GO:0003887
Seca10g00055 859 MobiDBLite consensus disorder prediction 641 680 - -
Seca10g00055 859 SUPERFAMILY DNA/RNA polymerases 82 336 IPR043502 -
Seca10g00055 859 Gene3D - 27 112 - -
Seca10g00055 859 MobiDBLite consensus disorder prediction 812 859 - -
Seca10g00055 859 Gene3D - 264 337 - -
Seca10g00055 859 FunFam DNA polymerase kappa subunit 168 263 - -
Seca10g00055 859 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 342 439 IPR036775 GO:0003684|GO:0006281
Seca10g00055 859 Pfam Ubiquitin-Binding Zinc Finger 590 623 IPR041298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00055 Seca-Chr10 481757 491947 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00055 K03511 - gmx:100816973 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00055 10 481757 491947 Seca10g00055 10 481757 491947 ECH
Seca10g00055 10 481757 491947 Seca8g07688 8 174189339 174192119 PCT