Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00054 ATGAACCCCAGCCCCCGGCCAGGCAGCAATCAGAGCGGAATGAGAATCCGATCGGTATTCGACGGCGGGGAGATGAGAAGGGAATTCGAGGAAAATGGTTTCGACCCAAAGTTCATTCCAATCATATGGAAGCATCTCATTCTCAATCTCATTCAAAACGGTGAACGCCAATGGGAGTGGGACAAACAAGTTCCATCGTTGCCTTCTGCAGCTTATTCCTTCCTTCGTTCCAACTTCACGAACCCTCTCTCTTCCTCTCTCCACTCTGTTTTCCACTCTGCTGATAACCTCACCTCCAAGCTCCTCATCAAGCTCCATAATGGAGCTTTTGTGGAGGCTGTCATAATGAGGTATGATACTCGTTTGGGCAAATATGGTGGCAAACCACGTCCCGGTGGTCTAAGAGCAACTTTGTGTATATCATCTCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCAACTGGAAGTATGGGATTCAAAAATAACTTATCCTCGGGAGAAATTGTGGAACAGTTAGTTCATGCCTCTAGTATCGCACAAATCCGTAATGTTGTCTTCATGGGCATGGGAGAGCCTCTGAACAACTATTCTGCTGTGGTAGAATCTGTTCGTGTCATGACTGGATCACCATTTCAATTGTCATCGAAAAGGATTACCATCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTTCATAATGATCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGCTGCCAGATAATGCCTGCTGCTCGTGCCTTCCCTTTAGAAAAACTTATGGATTCTCTTCAAGAATATCAAAGGAAAAGTCTGCAGAAAATATTAATTGAATACATAATGCTTGATGGCGTGAATGATGAAGAGCAGCATGCTCACCAATTGGGAAAGCTGCTAGAGACATTTCAAGTGGTAAAGACTCAACTTTTACTTGGTAGCATATGA 972 0.4475 MNPSPRPGSNQSGMRIRSVFDGGEMRREFEENGFDPKFIPIIWKHLILNLIQNGERQWEWDKQVPSLPSAAYSFLRSNFTNPLSSSLHSVFHSADNLTSKLLIKLHNGAFVEAVIMRYDTRLGKYGGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASSIAQIRNVVFMGMGEPLNNYSAVVESVRVMTGSPFQLSSKRITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVKTQLLLGSI. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00054 323 SFLD Radical SAM 141 299 IPR007197 GO:0003824|GO:0051536
Seca10g00054 323 Pfam 4Fe-4S single cluster domain 145 232 - -
Seca10g00054 323 CDD Radical_SAM 145 313 - -
Seca10g00054 323 PIRSF Cfr 21 320 IPR004383 GO:0006364|GO:0008173
Seca10g00054 323 PANTHER 23S RRNA METHYLTRANSFERASE 11 316 IPR040072 -
Seca10g00054 323 Pfam Radical SAM superfamily 141 299 IPR007197 GO:0003824|GO:0051536
Seca10g00054 323 FunFam 23S rRNA methyltransferase 85 319 - -
Seca10g00054 323 Gene3D Aldolase class I 86 319 IPR013785 -
Seca10g00054 323 SUPERFAMILY Radical SAM enzymes 137 298 - -
Seca10g00054 323 ProSiteProfiles Radical SAM core domain profile. 132 323 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00054 Seca-Chr10 477641 481592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00054 - - tpra:123909522 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00054 10 477641 481592 Seca10g00054 10 477641 481592 ECH