Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00044 ATGGCTTCCTCTTCTTCTTCTTCACTGGAACCAGGTTTATCTGAAGCAGATTACGACTTAATCTATGGCTCTGAGTCAGGTTGGGTCGAAGCCCGAACTTCGTGCCCTCACCTCGCTCCCTTATCTGCAGATCTTACCCACATTCCGACCCCTGATACTCCCTGCAACAGGTGCCAACACCCGAGTGAAAACTGGTTGTGTTTGTCTTGTAAGGACGTGCTCTGTAGCCGTTTTGTGAACAAGCATATGCTCCAGCATTTTCGGGAAACAAATCATAGTGTGGCCCTCAGTTTCAGGTACTGA 303 0.4884 MASSSSSSLEPGLSEADYDLIYGSESGWVEARTSCPHLAPLSADLTHIPTPDTPCNRCQHPSENWLCLSCKDVLCSRFVNKHMLQHFRETNHSVALSFRY. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00044 100 SUPERFAMILY RING/U-box 32 99 - -
Seca10g00044 100 Pfam Zn-finger in ubiquitin-hydrolases and other protein 55 98 IPR001607 GO:0008270
Seca10g00044 100 SMART Zf_UBP_1 54 98 IPR001607 GO:0008270
Seca10g00044 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 100 IPR013083 -
Seca10g00044 100 ProSiteProfiles Zinc finger UBP-type profile. 33 100 IPR001607 GO:0008270
Seca10g00044 100 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00044 Seca-Chr10 378807 380751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00044 - - aprc:113869857 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00044 10 378807 380751 Seca10g00044 10 378807 380751 ECH