Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00043 ATGTTGGGTGAAGGTGAAGAAGAGGGAATGTTCAGTAGTGATGATGTGAAGAAATCCAATCCAAAACTAACATTATTGCCTCTCATAGCTCTAATCTTCTATGAAGTATCAGGGGGTCCTTTTGGAGTAGAGGATTCTGTCAGGGCTGGAGCTGGTCCTCTTTTATCTTTGCTTGGATTCTGTATTTTCCCTCTCATTTGGAGCATACCTGAAGCTCTCGTTACAGCTGAACTTGCCACAACCTTCCCTGACAACGGTGGCTATGTTGTTTGGATATCCTCTGCTTTTGGACCTTTTTGGGGTTTTCAGGAAGGATTTTGGAAATGGTTCAGTGGGGTCATGGACAATGCTCTTTACCCTGTTTTGTTCCTCGATTACCTGAAGCATTCCTTGCCAATCTTTACCCTAACCATTGCTCGTATCCCTGCTCTTTTAGGAATCACCTTTTCACTAACCTACTTGAATTACCGAGGCCTTCACATTGTTGGCCTTTCTGCTGTTCTGCTTGCCCTTTTCTCCCTTTTCCCTTTTCTCATAATGGCCATTCTTTCCATTCCACTAATTAGGCCCAGGCGATGGCTTGTTGTAGATTTGCACAAGGTGGATTGGCGTGGATATTTCAATAATATGTTCTGGAACTTAAATTATTGGGATAAGGCTAGCACCCTTGCAGGAGAGGTTGAAAATCCCAGTAAAACATTCCCAAAAGCTCTTCTTGGAGGACTAGTTTTGGTGATCTCCTCCTATTTGATTCCACTACTTGCGGGAACAGGTGCTTTGAGATCCTCGCCAAGTGAATGGGCAGATGGTTATTTTGCACAAGTGGGGATGTTAATTGGTGGCTTTTGGCTCAAACTGTGGATTCAAGCAGCTGCTGCCATGTCTAACCTGGGCTTGTTTGAAGCAGAAATGAGCAGTGATGCTTTTCAACTTCTAGGAATGAGCAAGATGGGAATGCTTCCAGCAGTATTTTCCTCAAGGTCTAAGTATGGAACTCCCACTGTTAGCATTCTGTTCTCTGCCACTGGAGTTATCTTCTTGTCATGGATGAGTTTTCAGGAAATCGTGGAGTTCCTCAATTTCTTATATGCTATAGGAATGCTTCTTGAGTTTGCAGCTTTTATAACTTTGAGATTGAAGGAGCCAAATCTTTATAGACCTTACAGAATTCCGTTGCAAACATTTTGGGCGGCCATGCTTTGCCTGCCTCCTGCTTTGTTGCTTGTTCTTGTTATGTGCCTGGCTTCTTTGAGAACGTTCTTTGTGAGTGGAGCTGTAATTCTCTTGGGGTTTATCCTATACCCTGTCTTGGTCCAAGCCAAGCATAAGAATTGGATAACATTTGAAGTGGAACCACCTTCCAAAGGTTGCCAGCAATCCCATTCAGAACTGAGTGACCAAGAAAACAAGGATTTTGAGCTTCTTGTGAGCTCACCTTCTGCTTGTGTGGAAGAAGAACTGTCTTTAATGCAAAGTGATTCCAAACCAAGCTAG 1494 0.4337 MLGEGEEEGMFSSDDVKKSNPKLTLLPLIALIFYEVSGGPFGVEDSVRAGAGPLLSLLGFCIFPLIWSIPEALVTAELATTFPDNGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFLDYLKHSLPIFTLTIARIPALLGITFSLTYLNYRGLHIVGLSAVLLALFSLFPFLIMAILSIPLIRPRRWLVVDLHKVDWRGYFNNMFWNLNYWDKASTLAGEVENPSKTFPKALLGGLVLVISSYLIPLLAGTGALRSSPSEWADGYFAQVGMLIGGFWLKLWIQAAAAMSNLGLFEAEMSSDAFQLLGMSKMGMLPAVFSSRSKYGTPTVSILFSATGVIFLSWMSFQEIVEFLNFLYAIGMLLEFAAFITLRLKEPNLYRPYRIPLQTFWAAMLCLPPALLLVLVMCLASLRTFFVSGAVILLGFILYPVLVQAKHKNWITFEVEPPSKGCQQSHSELSDQENKDFELLVSSPSACVEEELSLMQSDSKPS. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00043 497 Pfam Amino acid permease 27 408 IPR002293 GO:0016020|GO:0022857|GO:0055085
Seca10g00043 497 PANTHER POLYAMINE TRANSPORTER PUT1 14 468 IPR044566 GO:0022857
Seca10g00043 497 FunFam Amino acid permease, putative 19 449 - -
Seca10g00043 497 Gene3D Amino acid/polyamine transporter I 19 451 - -
Seca10g00043 497 PIRSF AA_transporter 1 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00043 Seca-Chr10 374202 376847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00043 5 471 Organic Solute Cotransporters AT3G19553 74.153 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00043 - - vun:114172952 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00043 10 374202 376847 Seca10g00043 10 374202 376847 ECH