Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00028 ATGGGTTCTTCGCTGCTGCCCCCACCTACCCAGAACCCTTGTGCACAAGCTTTTTCGTCTAAGACAGGTTCGATTAGTCCCTGCCCCTGCTGCCACACAAGATCATGCATTCAAAAGGGTACATACATCATTTTCTCATTACCTACAACTCCTTTTCTTATCTCAAAACTCAAACTCTTCATTCTTAACCATCGAATCGAATCCAAGGTGGCGGCCAAGGATACCTTGAACTCCGGAGATCGCATCTTTCTTCCTCGTTCTGTTAAAGAAATGCCTCCACAGAACCTTCACTGTCACGTCACTGCCACAGAAATCAACTTCATCCGTACTCTTCTTATCTATAAGGATCCAGCTACTCTTGTTCTGAATAAACCTCCAGGAATGCCAGTGCAGGGTGGCATTAGTATCAATCAGAGTTTAGATGTAGTAGCTGCAGCATGTTTAAAATATGAATGCTCAGAACCCCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGCATTCTGGTGATGGGAAGGACAAAGACTAGTGCTGCAGTTCTGCATTCCATTTTCCGGGAGAAAACTTCCCGGGCTTCAGATGATATTGACTCAAAAAAGAGAATCCTACAAAGAAGGTACTTGGCATTGGTCATTGGATGTCCTAGACGTCCAAGAGGATTGATTACTGCTTCACTGGGTAAGGTGGTGGTTGACAACGGAAAATCTGATCGAATAACTATCGTTGACAATTCTACGTTACTGTCATCACAACATGCAATTACAGAGTACCGAGTGATTGGATCATCATCACATGGTTACACATGGTTGGAGTTGTCCCCTTTAACAGGAAGAAAACACCAGCTTCGAGTCCACTGTGCTGAGGTGCTAGGTACACCTATAGTGGGAGACTACAAGTATGGATGGCAAGCTCACAGGAAATGGGGACATTTTGCTTTCTCTAATATGGATGACTCAAGGGAAGAGGTTCTCGAGGAAGAGACACTCCCCTTTGGCCTTAATTTGAACAAGGGGAGCATATCTGAGAAGCATCCTCGTTTACATCTTCATTGCAAACAAATAGTCTTACCCAATATATCCCAAGCACTTCAAAATGTGCAATCAGATTCCAATTATGATCTCTCACAAGTAGAAACGCTTGACTTTGTCGCAGATATGCCTGCATACATGCAAAGGAGTTGGGATGTCACGAATTCTTGA 1203 0.4406 MGSSLLPPPTQNPCAQAFSSKTGSISPCPCCHTRSCIQKGTYIIFSLPTTPFLISKLKLFILNHRIESKVAAKDTLNSGDRIFLPRSVKEMPPQNLHCHVTATEINFIRTLLIYKDPATLVLNKPPGMPVQGGISINQSLDVVAAACLKYECSEPPRLVHRLDRDCSGILVMGRTKTSAAVLHSIFREKTSRASDDIDSKKRILQRRYLALVIGCPRRPRGLITASLGKVVVDNGKSDRITIVDNSTLLSSQHAITEYRVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFAFSNMDDSREEVLEEETLPFGLNLNKGSISEKHPRLHLHCKQIVLPNISQALQNVQSDSNYDLSQVETLDFVADMPAYMQRSWDVTNS. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00028 400 Gene3D Pseudouridine synthase 103 370 - -
Seca10g00028 400 Pfam RNA pseudouridylate synthase 120 288 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca10g00028 400 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 67 397 - -
Seca10g00028 400 CDD PseudoU_synth_RluA_like 120 310 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca10g00028 400 SUPERFAMILY Pseudouridine synthase 108 359 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00028 Seca-Chr10 300851 304747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00028 - - gmx:100779473 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00028 10 300851 304747 Seca10g00028 10 300851 304747 ECH