Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00026 ATGTCGGGAACGATAACTGGCATTCAGGGGCAACCACTCGAGGTGACTGTGGTGTCGTGCTCCAAATTGAAGGACACAGAATGGATTTCAAGGCAAGATCCCTACGTCTGTGTTGAATATGGAAGCACCAAGTTCCGAACCAGAACCTGCACAGACGGTGGAAAAAATCCCATATTCCAAGAGAAGTTCATCTTTCCCCTCATTGAAGGCCTTCGCGAGCTCAATGTCTTCGTTTGGAACAGCAATACACTCACTTTCGATGATTTTATCGGCAGCGGAAAGATTCAATTGCAAAAGGTTCTTTCTCAAGGTTTTGATGACGCTGGTTGGCCGCTTCAAACAAAAACTGGCAGATACGCCGGCGAAGTAAAACTCATATTGCATTATGCAAATGCAAATCGCAACCAGAAATCAGCCTCAGCCTCAGCCTCAAGCCATGCTCCATCAGCACCTCCCTATGTGCCAGCAGCAACTCCCCCAGTCCCTTTATATTCTGCACCTTCTACTTCCTATCCACCACCACCTGCTGCAGCTCATTACCTTCCAACAGGATCTGTACCTGCTTATCCATCACTAGCATCCACAGTTTCTTACCCACCACCTCCCACAACTTACCCTGCTTCATCTCCCTATCCTTCACATTCATCTGCCTATCCACCATCATCATATCCTGCTTCATCTCCTTATCCTTCACATTCATCTCCCTATCCGCCATCATCATACCCTCCTCCCCCTTCATATCCGCCAACTCCAGCTTATCCCCCACCTCCATATCCACCACCTGCAGGTTATTCACCTGGAATATACCCTCCACCGCCATACTGA 825 0.4836 MSGTITGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPIFQEKFIFPLIEGLRELNVFVWNSNTLTFDDFIGSGKIQLQKVLSQGFDDAGWPLQTKTGRYAGEVKLILHYANANRNQKSASASASSHAPSAPPYVPAATPPVPLYSAPSTSYPPPPAAAHYLPTGSVPAYPSLASTVSYPPPPTTYPASSPYPSHSSAYPPSSYPASSPYPSHSSPYPPSSYPPPPSYPPTPAYPPPPYPPPAGYSPGIYPPPPY. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00026 274 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 131 IPR035892 -
Seca10g00026 274 CDD C2 13 110 - -
Seca10g00026 274 PRINTS Proline rich extensin signature 189 206 - -
Seca10g00026 274 PRINTS Proline rich extensin signature 233 258 - -
Seca10g00026 274 PRINTS Proline rich extensin signature 139 160 - -
Seca10g00026 274 PRINTS Proline rich extensin signature 160 176 - -
Seca10g00026 274 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 7 274 - -
Seca10g00026 274 SMART C2_3c 12 109 IPR000008 -
Seca10g00026 274 Pfam C2 domain 13 103 IPR000008 -
Seca10g00026 274 Gene3D C2 domain 9 151 IPR035892 -
Seca10g00026 274 MobiDBLite consensus disorder prediction 223 244 - -
Seca10g00026 274 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Seca10g00026 274 MobiDBLite consensus disorder prediction 204 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00026 Seca-Chr10 281538 283607 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00026 - - gmx:100776879 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00026 10 281538 283607 Seca10g00026 10 281538 283607 ECH