Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02067 ATGCAGCACAGTAATTTCCAGAATTATCTTTCTCATCATCATCATCAAAGTCAGCTGAAGAAGCAGGAACATCCTCATCATGGCTACGGATTCCCCTTTGTTTGTGAATTTAAGCTTATTGAACAGAAGGCGTCAGGGTCTAGAACAATAGGGGAATGCATCTATGAGGCGTTGATGCCGATGATAGCTATGGTTGAGGCTTTGGTGTTTGCTGTGACTGGTTGTTTCAACTATCGTCCACTCAAACGTGTCTATACTGCTAAGGATTTCGCGCAACTTGCTGATGAAACCATATTTACTGTTAATGAACTGGAGGCATTGCATGTGCTGTTTAGAAAGCTAAGTAGCTCCCTAATTGATGATGGCTCAATTCACAAGGTGGAGCTTCGATTGGCACTATTTCAAACCCCAAATGAAGAAAATCTTTTCTTGGATCGAGTTTTTGATCTTTTTGACGAAAAGAGAAATGGGGCTATCGAGTTTGACGAATTTGTCCATGCCCTCAGTGTTTTCCATCCTCATGCCCCTATAGATGAAAAAATTGATTTTACATTCAAGCTCTATGACCTGAGGCAAACTGGGTTTATCGAGCCAGAGGAAATCAAGCAAATGGTTATAGCCCTTTTGATGGAATCTGACGTGAATATTTCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCTGATGTGGATAAAGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTAGAAATCCATCCATCTTGAAGAACATGACAATTCCTTATTTGATGAATATCACTACTCTGTTTCCTAGTTTTGTTTCCAAATCAGAGGCTGAACTTTAA 849 0.3934 MQHSNFQNYLSHHHHQSQLKKQEHPHHGYGFPFVCEFKLIEQKASGSRTIGECIYEALMPMIAMVEALVFAVTGCFNYRPLKRVYTAKDFAQLADETIFTVNELEALHVLFRKLSSSLIDDGSIHKVELRLALFQTPNEENLFLDRVFDLFDEKRNGAIEFDEFVHALSVFHPHAPIDEKIDFTFKLYDLRQTGFIEPEEIKQMVIALLMESDVNISDDLLEAIVDKTIADVDKDNDGKISKEDWKAFVSRNPSILKNMTIPYLMNITTLFPSFVSKSEAEL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02067 282 SUPERFAMILY EF-hand 91 274 IPR011992 -
Rops9g02067 282 PRINTS Recoverin family signature 194 212 - -
Rops9g02067 282 PRINTS Recoverin family signature 147 168 - -
Rops9g02067 282 PRINTS Recoverin family signature 240 260 - -
Rops9g02067 282 ProSitePatterns EF-hand calcium-binding domain. 233 245 IPR018247 -
Rops9g02067 282 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Rops9g02067 282 CDD EFh 180 250 IPR002048 GO:0005509
Rops9g02067 282 Pfam EF-hand domain pair 179 248 IPR002048 GO:0005509
Rops9g02067 282 SMART efh_1 143 171 IPR002048 GO:0005509
Rops9g02067 282 SMART efh_1 180 208 IPR002048 GO:0005509
Rops9g02067 282 SMART efh_1 224 252 IPR002048 GO:0005509
Rops9g02067 282 ProSiteProfiles EF-hand calcium-binding domain profile. 176 211 IPR002048 GO:0005509
Rops9g02067 282 FunFam calcineurin B-like protein 3 89 281 - -
Rops9g02067 282 Gene3D - 89 282 - -
Rops9g02067 282 PANTHER CALCINEURIN B 74 280 IPR045198 GO:0005509|GO:0019722|GO:0019900
Rops9g02067 282 Pfam EF-hand domain pair 145 165 IPR002048 GO:0005509
Rops9g02067 282 ProSiteProfiles EF-hand calcium-binding domain profile. 220 255 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02067 Rops-Chr9 37981256 37985700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02067 65 281 EF-hand Containing Proteins AT5G55990 54.839 2.94e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02067 K06268 - gmx:100810494 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02067 9 37981256 37985700 Rops9g02067 9 37981256 37985700 ECH