Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02025 ATGGGTGAGGCTCCAGAGGTGTTCTATGTTAATGGGTTCTCAAAGTTTGGTCATGAAGAGACTCAACAAAACCATGGCAACAATCAGAACAATGATTCTTCTTGGTACGAGGAAGTCATCGATGATGATCTCAAATGGTCTTTTAAACTCAACAGGGTGCTCCATAAAGCGATTAGTGAGTACCAGGACATAGCTCTCTTAGATACAAAGCGTTTTGGAAAGGCCTTGGTGCTTGATGGGAAGATGCAGAGTGCTGAAACGGATGAATTCATTTATCACGAATGCTTGATTCATCCCCCTCTTTTATGTCATCCCAACCCCAAGAGAGTGTTTATAATGGGAGGAGGTGAAGGTTCTGCAGCTAGGGAAGTCCTCAAGCACAAGTCAATAGACAAAGTGGTCATGTGCGACATAGACAAGGAGGTGGTAGATTTCTGCCGAAAATACTTGATTGCAAACAGGGAGGCATTTTCTGATAAAAAGCTCGACCTTGTCATCAATGATGCCAAGGCTGAATTAGAGAAGAGAAAGGAGAAATTTGATGTGATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGGCCTTGCTATCAACTCTACACTAAATCCTTTTATGAGAAAGTTGTGAAGCCCAAGCTGAATGACAATGGCATTTTTGTCACCCAGGCTGGACCGGCTGGTATCTTCACACACAAAGAGGTCTTCACTTCTATTTATAACACAATCAAACAAGTCTTCAAATATGTGGTGGCATACACGACTCATGTACCATCATTTGCTGATACATGGGGATGGGTTATGGCTTCAGATCAACCACTATCAATTGGTGCTGAGGAAATGGACAAAAGAATTGAAGCAAGAATAGATGGAGAACTGCACTATCTAAATGGCGCTTGGTTCAATTCATCTACCATCATGAATAAGACTGTTTCCCTATCGCTGAAGAATGAAACTCACGTGTACACTGAAGAAAATGCTAGGTTTATCCCTGGACATGGCATGGCTTATCGTCTCTAA 1017 0.4228 MGEAPEVFYVNGFSKFGHEETQQNHGNNQNNDSSWYEEVIDDDLKWSFKLNRVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPPLLCHPNPKRVFIMGGGEGSAAREVLKHKSIDKVVMCDIDKEVVDFCRKYLIANREAFSDKKLDLVINDAKAELEKRKEKFDVIVGDLADPLEDGPCYQLYTKSFYEKVVKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVVAYTTHVPSFADTWGWVMASDQPLSIGAEEMDKRIEARIDGELHYLNGAWFNSSTIMNKTVSLSLKNETHVYTEENARFIPGHGMAYRL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02025 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 34 309 IPR029063 -
Rops9g02025 338 Pfam Spermine/spermidine synthase domain 89 267 - -
Rops9g02025 338 Gene3D Spermidine synthase, tetramerisation domain 33 85 IPR037163 -
Rops9g02025 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 33 270 IPR030374 -
Rops9g02025 338 NCBIfam fused MFS/spermidine synthase 106 261 - -
Rops9g02025 338 Hamap Polyamine aminopropyltransferase [speE]. 34 315 IPR001045 GO:0003824
Rops9g02025 338 FunFam Polyamine aminopropyltransferase 86 333 - -
Rops9g02025 338 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 29 325 - -
Rops9g02025 338 CDD AdoMet_MTases 109 222 - -
Rops9g02025 338 Gene3D Vaccinia Virus protein VP39 86 337 IPR029063 -
Rops9g02025 338 Pfam Spermidine synthase tetramerisation domain 35 86 IPR035246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02025 Rops-Chr9 37328723 37332930 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02025 K18787 - gmx:100784972 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02025 9 37328723 37332930 Rops9g02025 9 37328723 37332930 ECH