Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01953 ATGTTCCAAAGAAACCCTTCATACACAAATCCAGAACCTTGCCAGCATCTTGCTGATTACAAGCTCAAGCATGGCTTCAATGGCTACAAAGCCATCCAGAAGCTTCTTGTTACCTCTCCAATTGGGAGGACAAGTATCAAGAAACCCAATACAAAGATACCCAGATGCAGTTACTGTAATGGGTTTGAAGGGAGGCTCTATTTATGTCTGATTTGTTCTTCATTCTCTTGTTTGGATCATACCCTTTTGCATCCAAAATCTGAAAATGGTCATGCTGTGTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCCATGATCAATTGTATGACCCTGATTTTGATCAAGTTGTGATGTCTAAACATTCAATGGTTGGTGTTTCAGCTGGTGCCATTGGAAATGAGAGCATTGGCCAGAGATTGATCAAAAGAAGGAGATTGGTATCTGGGATTGGATTGGATTTGGAGAAATCTAAGTACAGAGTTAACACCAAAGATCTGAGGGCTAAATCTTGTTATCCTTTGGGATTGAGGGGTTTGAACAATTTGGGTAGTACTTGCTTCATGAATTCTGTGTTGCAAGCATTGCTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACACCGTTTGGAAGCTTGTCAGAGACGAACCATGGATCAGATGTGTTTGCTTTGTGATATCAATGCTATTTTTTCAGCTGTGTATTCGGGTGATCGAAATCCATACAGCCCTGCTCAGTTTCTTTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATATTAGATGCAATCCATGAGAAAGAGGGCAAAACAAGGAACGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAGAGTGTTCTATGGGCTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTCAACTTGGACACCAATGTCTCTTTGACCGAAAAGGGTAAAAAGCATACCAAACGGAATGAGGATTGCAGTATGTCTACACTTTTGGGTTGTTTGGATTTGTTCACTAGGTCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAAAATTGTCAAGAAAGGCAGAACTCATTGAAACAAATGTCCATTAGAAAGCTCCCATTGGTACTTAGTTTGCATGTAAAACGATTTGAGCACTCTTTTGTTAAGAAGTCATCAAGAAAAATAGATCGCCACCTACACTTTCCATTTTCCTTGGACATGACACCATATTTGTCCTCCTCAATCCTCAGAGCAAGATATGGAAATAGAATTTTTGCTTTTGGGGGTGATGAATCGGATATGTTTTCTCAGTTTGAGATTTTTGCAGTGGTGACACATTCGGGAACACTTGAGTCTGGCCATTATGTTTCTTTTGTGCGGTTAAGGGAGCAATGGTACAGATGTGATGATGCTTGGATAACGGAGGTTGATGAGGCAACAGTCAGAGCTTCACAATGTTACATGATTTTCTATGTGCAAAAGACCCTTTACAATAAAGCAAATGAAGATACGAGTCACCTGCCAAATTGCCCTGGAAGAGAGCTTTTTCTTCCTTTTGCTGGGTGTTGCTAG 1659 0.4147 MFQRNPSYTNPEPCQHLADYKLKHGFNGYKAIQKLLVTSPIGRTSIKKPNTKIPRCSYCNGFEGRLYLCLICSSFSCLDHTLLHPKSENGHAVFVDIERAELYCGVCHDQLYDPDFDQVVMSKHSMVGVSAGAIGNESIGQRLIKRRRLVSGIGLDLEKSKYRVNTKDLRAKSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHRLEACQRRTMDQMCLLCDINAIFSAVYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISILDAIHEKEGKTRNGSKGNGDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTNVSLTEKGKKHTKRNEDCSMSTLLGCLDLFTRSEKLGSDQKLYCQNCQERQNSLKQMSIRKLPLVLSLHVKRFEHSFVKKSSRKIDRHLHFPFSLDMTPYLSSSILRARYGNRIFAFGGDESDMFSQFEIFAVVTHSGTLESGHYVSFVRLREQWYRCDDAWITEVDEATVRASQCYMIFYVQKTLYNKANEDTSHLPNCPGRELFLPFAGCC* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01953 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 131 IPR013083 -
Rops9g01953 552 FunFam Ubiquitinyl hydrolase 1 8 129 - -
Rops9g01953 552 Pfam Ubiquitin carboxyl-terminal hydrolase 181 520 IPR001394 GO:0004843|GO:0016579
Rops9g01953 552 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
Rops9g01953 552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 523 IPR028889 -
Rops9g01953 552 Gene3D Cysteine proteinases 175 529 - -
Rops9g01953 552 ProSiteProfiles Zinc finger UBP-type profile. 36 130 IPR001607 GO:0008270
Rops9g01953 552 SUPERFAMILY Cysteine proteinases 176 522 IPR038765 -
Rops9g01953 552 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 95 522 - -
Rops9g01953 552 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Rops9g01953 552 FunFam Ubiquitinyl hydrolase 1 174 528 - -
Rops9g01953 552 SUPERFAMILY RING/U-box 13 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01953 Rops-Chr9 35994451 35998277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01953 181 520 Miscellaneous Gene Families AT2G24640 30.086 4.76e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01953 K11366 - gmx:100806347 1020.38