Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01944 ATGGTTATGAAGAGGCTCATAATCACACCCCTTTTGGTTCTTCTCATGAGTCTCAATTCCCATACATTCGCTGAATCTTCTGATCAGTGGAAATATAAGGGAAATGTTAGAGCTGCATATTGGCCTTCAGGTGATGACTTATCACCCTCTTCCATTGAAACAAAGTACTTCACTCATATTTACTACGCCTTCATAGAACCCGAACCAGAAACCTTCAAGCTCTTAGTCACCGACTCTGACAAAAAATGGATACCCCAGTTCATCAACGGGCTCCGCTACCGTTACCCACCGGTGAAAACTCTGTTATCCATTGGAGGAGGTGGAAGCAATGCAACTTTATTCTCTGAGATTGTAAGCACCAAGCAAAATAGAAAAAACTTCATATCCTCCACCATCCACGTGGCACGATATTACGGGTTCAACGGTCTTGATTTGGATTGGGAGTTCCCAGCAGATGAAAAAGACATGTCTAACCTTGCTTTGTTATTCAAAGAATGGCACCAAGCTTTGGTCGTGGAAGCTTTAACAAACAAAAAACCACGTTTGCTTTTGACTTCTGCGGTGTACTATGCCTCAACAATAAAACTTATTGGTAATGGGCCAAGATCATACCCGGCCCAAGCTATTACCCAATACTTGGATTGGGCCAGCCCAATGTGTTTTGATTATCATGGTGCATGGGCCAATGAAACTGGGTTTAATGCGGCATTGTATGATCCGAAATCTAATATAAGTACCAAATATGGTATCGGGTCATGGATCGAATCGGGTGTGCCGCCCGAGAAGTTGGTTATGGGTTTGCCCTTATATGGGAGGACATGGGAGCTGAAAGATCCGAATGTTCATGGGGTTGGAGCTAAAGCTGTTGGTAAAGCAACTGATACAGATGGTACTTTGAAGTATTATGAGATATTGGAGTTTAATAAAGAGAATGGTGCCACTGTTGTGTATGATGAGGGTGCTGTGTCTTTTTACTCTTATGCTGGTACTACTTGGATTGGGTATGATGATGGACCCTCCATAACAAAGAAGGTTCAGTTTGCTAGGTCAATGGGCTTGAAAGGATATTTCTTTTGGGCTATTGGTCAGGACAAGGATTGGACCATCTCAAGACAAGCTTCAAATGCATGGGGACACTGA 1140 0.4298 MVMKRLIITPLLVLLMSLNSHTFAESSDQWKYKGNVRAAYWPSGDDLSPSSIETKYFTHIYYAFIEPEPETFKLLVTDSDKKWIPQFINGLRYRYPPVKTLLSIGGGGSNATLFSEIVSTKQNRKNFISSTIHVARYYGFNGLDLDWEFPADEKDMSNLALLFKEWHQALVVEALTNKKPRLLLTSAVYYASTIKLIGNGPRSYPAQAITQYLDWASPMCFDYHGAWANETGFNAALYDPKSNISTKYGIGSWIESGVPPEKLVMGLPLYGRTWELKDPNVHGVGAKAVGKATDTDGTLKYYEILEFNKENGATVVYDEGAVSFYSYAGTTWIGYDDGPSITKKVQFARSMGLKGYFFWAIGQDKDWTISRQASNAWGH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01944 379 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
Rops9g01944 379 PANTHER CHITINASE 31 377 - -
Rops9g01944 379 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 35 379 IPR001223 GO:0005975
Rops9g01944 379 Gene3D Glycosidases 50 365 - -
Rops9g01944 379 Gene3D - 269 335 IPR029070 -
Rops9g01944 379 CDD GH18_plant_chitinase_class_V 36 370 - -
Rops9g01944 379 SMART 2g34 35 364 IPR011583 GO:0008061
Rops9g01944 379 FunFam Class V chitinase CHIT5b 269 335 - -
Rops9g01944 379 Pfam Glycosyl hydrolases family 18 39 364 IPR001223 GO:0005975
Rops9g01944 379 SUPERFAMILY (Trans)glycosidases 34 376 IPR017853 -
Rops9g01944 379 SUPERFAMILY Chitinase insertion domain 270 335 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01944 Rops-Chr9 35730522 35733328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01944 9 377 Glycoside Hydrolase AT4G19810 40.431 3.31e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01944 K01183 - gmx:100787511 623.624