Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01926 ATGTCTATCACCACCGAAGAGATTGTCTTCTTAGTCTTGCAGTTTTTGAATGAGGGAGCTTTAAAGGAAGCTGCACACACGCTTGAGCGTGAAACTGGGTTGTACTTTGATTTGAAGCATTTTGAGGCCATGGTGCTTGAGGGCAAGTGGGATGATGCTGAGATCTATCTTTCCGGGTTCACAAAGGTTTATGACAATCTTCACTCAGCCAGAATATACTTTGAAATGAGGAAACAAAAATACATTGAGGCATTGGACATCAACGATCGTTCAAAGGCTGTAGATATCCTTACCAAGGATCTGAAAGTCTTTGCCGAAAATAATGAAGAGCTGTTCAAAGAAATTACTCAGCTTTTGACCTTAAACAATATAAGATTAAATCGGATGCATCAAAATCCTGCTCCAGCACCTTCTTGTTATTCTGGACCATCTACTTCTGCTCCAACAAATCCAGATACAGCTTTGAGTATTGGGTATCCTAATGAAATATTCGAAGGAAGGCGCTCTAATGTTTCTGAAGAGGTATTTGAAATTCGTCAACCTTTCAAGTGCTCGATATCGCCGCTTATGCGTCCTGAAGCAAACAAGATTGTTAGACTGACTTACACCAATGCGGGAAATGATATTATAGCATTGGCATTAAATGGTACTCATCAAGTTTGGTCATGCCGACATAGTAGCTCTAATTTGGAAGCCAAGGCAACAACACAAGTTTTCCACCAATTATGGCAACCAACAAATGGTTTCAGATTTATGACCAATGACCTAAAAGGTGCCTACTTGGGAGACACAGTTTCCAGTTTTGCCATATCAAAAACGGATTCACATCTCATATCAACATCAGGGGGGATGATTTCTTTGTTCAATATATTGACATTTGAGACTCTGAAAAAAATCATGCCTCCACCACTTATGGTAACATGTCTTGCCTTCCACCCTCAAGACGATAATATACTTGTTGTAGGCTTGGATGACTCCAGTATACTTATATACAATATCAGTAACTATGAGGTTCAAACCAAGCTTGAGGGCCACTCTGAACGAGTTACTGGTCTTGCCTTCTCAAATACTCTGAATTTTCTTGTTTCTGGAGATGTAAATGCTAAGATTGTTGTATGGAATATCAATGGGTGGGAAAAACAGAGAGATGGGAGCTTGCAAGTACATAGACAAAAGGAGTCAAAAATACCATCTGAAACTCAAATTCAATTTCACCCAGATCAAATAAACTTTCTTATTGTACATAATATTCATCTTGCAATTTATGAAGCTGCAGATTTAAGATGTGTCCGCCAGTGGGTTCCAAAGGTTTCAATGGTTATCCACCAAGCAACTTTCTCATCTGATGGTCAAACTGTGTATGCAAGTTTAAATGATGGGACTCTGGCAATATTTGATGCTTTAACTTTTCAAATGAATTGTAGGATCCATCCCTCAGCCTACCTTGATGTATCTAACAGCTTCTACCTCTACTACCCAATTGCTATAGCTGCACATCCACGGAAACCGACCCAATTTGCAGCAGGGCTCACAGATGGTAGAGTTTGTGTGTTTGAGCCTCCGGTATCAAGTGGTAATTGGGGCAGAAACTCGGAGCAAGTATGTGGCAGTAACAATCTAAGCAAAGCTGAAACCTTACAAAAGCCAGAACAAGCACTTCTTGATCTTCTTTAA 1674 0.399 MSITTEEIVFLVLQFLNEGALKEAAHTLERETGLYFDLKHFEAMVLEGKWDDAEIYLSGFTKVYDNLHSARIYFEMRKQKYIEALDINDRSKAVDILTKDLKVFAENNEELFKEITQLLTLNNIRLNRMHQNPAPAPSCYSGPSTSAPTNPDTALSIGYPNEIFEGRRSNVSEEVFEIRQPFKCSISPLMRPEANKIVRLTYTNAGNDIIALALNGTHQVWSCRHSSSNLEAKATTQVFHQLWQPTNGFRFMTNDLKGAYLGDTVSSFAISKTDSHLISTSGGMISLFNILTFETLKKIMPPPLMVTCLAFHPQDDNILVVGLDDSSILIYNISNYEVQTKLEGHSERVTGLAFSNTLNFLVSGDVNAKIVVWNINGWEKQRDGSLQVHRQKESKIPSETQIQFHPDQINFLIVHNIHLAIYEAADLRCVRQWVPKVSMVIHQATFSSDGQTVYASLNDGTLAIFDALTFQMNCRIHPSAYLDVSNSFYLYYPIAIAAHPRKPTQFAAGLTDGRVCVFEPPVSSGNWGRNSEQVCGSNNLSKAETLQKPEQALLDLL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01926 557 SMART WD40_4 253 289 IPR001680 GO:0005515
Rops9g01926 557 SMART WD40_4 426 466 IPR001680 GO:0005515
Rops9g01926 557 SMART WD40_4 335 374 IPR001680 GO:0005515
Rops9g01926 557 SMART WD40_4 292 332 IPR001680 GO:0005515
Rops9g01926 557 SMART WD40_4 483 519 IPR001680 GO:0005515
Rops9g01926 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Rops9g01926 557 Gene3D - 254 538 IPR015943 GO:0005515
Rops9g01926 557 SMART ctlh 34 92 IPR006595 -
Rops9g01926 557 Pfam WD domain, G-beta repeat 339 374 IPR001680 GO:0005515
Rops9g01926 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 376 IPR001680 GO:0005515
Rops9g01926 557 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Rops9g01926 557 SMART Lish 4 36 IPR006594 GO:0005515
Rops9g01926 557 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Rops9g01926 557 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Rops9g01926 557 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 172 536 IPR027728 GO:0006355
Rops9g01926 557 SUPERFAMILY WD40 repeat-like 261 520 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01926 Rops-Chr9 35331113 35336767 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01926 - - cam:101499588 526.939