Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01863 ATGCTCTCTCAGAAGCCTCGTCACTTACTCTTCTCCCTTCGTTCATTGCTTTGCACCCTCAAACCAAACCCTATTCCTTCAATCCTTATCTCACCACATCCTCTCTCTTCTTCATGTTCTTCTTCTTCATGGCTATCTGTACCTGGAAACCCAATCATCCACTGGCCCTCATTACCAGCCCCTCAACCCACATCAAAACCCGCTTCAAACCCGAACCCGGAACCCGACTCTGATTTTCCCCACCACGATTTCTCTCTCATTTCCAATCTATTCACCGACCCTTCCATCTCTCCCGGTCCGGTCCTCCACTCCGAACTCGACCGGTCCGGGATCGAACCGGATTCGACACTCCTACGTGCCGTGTTCGACCATTTCGGCTCCTCACCGAAGCTTCTACACTCGCTGTTCCTGTGGGCTGAGAAACGACCCGGGTTTAGACCCGACCCGAAGTTATTTGACTCCGTGGTTAACGTTCTTGCCAAATCGAGGGATTTTGACTCCGCTTGGACGCTTGTTCTTGATCGAATTGAAAGAGACCAGGAAGAAGAAGAAGAAGAAGAAACGTTGGTTTCCATTGGTACCTTTGCTATCATGATTCGACGCTATGCGCGCGCAGGTATGTCCAAATTTGCCATTAGCACATTTGAGTTTGCAAGAAATCACAAGTCAATTGTGGATTCTGGCTCAGAAATGAGTTTATTTGAGATACTGATGGGTTCACTTTGTAAAGAAGGGTCTGTGAGAGAAGCTTCAAAGTATTTCCTTAAGAGAAAAGAGACAGACCTGGGTTGGGTTCCAACAATTAGAGTTTACAACATAATGTTAAATGGTTGGTTTAGAGAGAGGAGATTCAAACAGGGTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGACGCCAAGTGTGGTGACATATGGTACCCTTGTGGAAGGATACTGTCGAATGCGCCGTGTTGAAAAGGCGCTTGAAATGGTTGGTGATATGACCAGAGAAGGAATTCGACCAAATGCAATTGTGTATAACCCTATAATTGATGCATTGGCTGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGATGGAGCGTTTTCATGTTTTAGAAATTGGCCCCACTGATTCAACATACAATTCTCTGATGAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGCAAAATTCTTAAAATGATGATAAGTAGGGGTTTCATTCCAAGCCCCACCACCTATAACTACTTTTTTAGGTACTTTTCTAGATGTGGGAAAGTTGAGGAGGGAATGAATCTTTATAACAAGATGATTGAATCTGGTCATACCCCAGATCGGCTAACTTACCATCTTGTGGTGAAGATGTTATGTGAAGAGGAGAAGTTAGACTTGGCAGTTAAAGTTAGCAGGGAAATGAGGCATAATGGATATGACATGGACTTGGCTACGAGTACCATGTTGATTCATTTGCTATGCAAACTGCATAGGTTAGAAGAGGCTTTTGCAGAATTTGAGGACATGATTCGAAGGGGTTTAGTTCCTCAGTATCTTACATTCCAGAGATTGAATGCGGAGTTAAAGAAAAAAGGTATGACTGAAATGGCTCAAAAACTTTGCACTTTGATGTCTTCTGTTCCTCATTCTACCAACTTGCCAAATACTTATGGTGAAGACAGAGATGAAGCATATGCACGAAGAAAATCTATAATCAAGAAAGCCAAAGCATTTTCTGATATGCTCAAGAACTGTGAGGACCCTAGAGAACTTTACAAGTATAGAAATTCATCAGAAAATGCTGTCTCAAGTGCAAACTGTTTGGTAGAGGATGGTAAGAAAAAGATAAGTAAAGATGAACATCTGTGA 1854 0.4315 MLSQKPRHLLFSLRSLLCTLKPNPIPSILISPHPLSSSCSSSSWLSVPGNPIIHWPSLPAPQPTSKPASNPNPEPDSDFPHHDFSLISNLFTDPSISPGPVLHSELDRSGIEPDSTLLRAVFDHFGSSPKLLHSLFLWAEKRPGFRPDPKLFDSVVNVLAKSRDFDSAWTLVLDRIERDQEEEEEEETLVSIGTFAIMIRRYARAGMSKFAISTFEFARNHKSIVDSGSEMSLFEILMGSLCKEGSVREASKYFLKRKETDLGWVPTIRVYNIMLNGWFRERRFKQGERLWEEMKKENVTPSVVTYGTLVEGYCRMRRVEKALEMVGDMTREGIRPNAIVYNPIIDALAEAGRFKEALGMMERFHVLEIGPTDSTYNSLMKGFCKAGDLVGASKILKMMISRGFIPSPTTYNYFFRYFSRCGKVEEGMNLYNKMIESGHTPDRLTYHLVVKMLCEEEKLDLAVKVSREMRHNGYDMDLATSTMLIHLLCKLHRLEEAFAEFEDMIRRGLVPQYLTFQRLNAELKKKGMTEMAQKLCTLMSSVPHSTNLPNTYGEDRDEAYARRKSIIKKAKAFSDMLKNCEDPRELYKYRNSSENAVSSANCLVEDGKKKISKDEHL* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01863 617 MobiDBLite consensus disorder prediction 56 74 - -
Rops9g01863 617 MobiDBLite consensus disorder prediction 56 79 - -
Rops9g01863 617 Gene3D Tetratricopeptide repeat domain 224 362 IPR011990 GO:0005515
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Rops9g01863 617 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Rops9g01863 617 NCBIfam pentatricopeptide repeat 410 442 IPR002885 -
Rops9g01863 617 NCBIfam pentatricopeptide repeat 270 302 IPR002885 -
Rops9g01863 617 NCBIfam pentatricopeptide repeat 482 511 IPR002885 -
Rops9g01863 617 NCBIfam pentatricopeptide repeat 304 338 IPR002885 -
Rops9g01863 617 NCBIfam pentatricopeptide repeat 339 372 IPR002885 -
Rops9g01863 617 Pfam PPR repeat 480 509 IPR002885 -
Rops9g01863 617 Pfam PPR repeat 340 363 IPR002885 -
Rops9g01863 617 Pfam PPR repeat 236 255 IPR002885 -
Rops9g01863 617 Pfam PPR repeat family 266 315 IPR002885 -
Rops9g01863 617 Pfam PPR repeat family 374 417 IPR002885 -
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Rops9g01863 617 Gene3D Tetratricopeptide repeat domain 102 223 IPR011990 GO:0005515
Rops9g01863 617 Gene3D Tetratricopeptide repeat domain 368 596 IPR011990 GO:0005515
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Rops9g01863 617 SUPERFAMILY HCP-like 244 449 - -
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Rops9g01863 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Rops9g01863 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 121 547 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01863 234 576 Glycosyltransferase AT1G05670 24.713 7.08e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01863 - - gmx:100793484 907.516