Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01803 ATGGATAACGAAGCCTTTAGCCAACGTCTCCTTGTAGTACCATTGAAAATGCTTCGGAGTCACATTTTTTCTTCGCTCACTTCTCCATTCTACTCAAAGCCACTTCATTCCTTACACGTCCCTCTTTCTTGTTCTTCTTCTTCTTCTGCTCCACTACGGCGTCGTTTGGTGAGGATCCCTTATCCTTCTAAAACAAATCTCAAAAGCCTCACTTCGCGCATAGTTCAACTCACTCGCCGAAAACAGCTTCGCCAGATTTTGTATGAGATTGAGGTTGCGAAGAAGCATTTTGGGAAATTGAACACGATAGTGATGAACGCGGTGTTGGAGGCTTGTGTTCGTTGCGGTGACATCGATTCCGCTCTTCGCATATTCAATGAGATGAAAAACCCCAAGGGTTGTGGTGCGGATACTGTCACGTATGCCACGATTTTGAAGGGGTTAGGTGAGGCACGAAGAATTGATGAAGCTTTTAAATTGCTTGAATCTGTGGAAAATGGTACTGCCATGGGAAGTCCAAAGTTGTCAGCTCCATTGATCTTTGGTCTGCTAAATGCCTTAATTGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCCGTTATGGTTTTGTGCTGCGTGAAGGTGGCAATTTCTCAGTCTCAGTATACAACATACTAATGAAGGGGTATATAAACTCAGGCTGTCCACACACTGCAATAAACATGCTCAATGAAATTTCACATCAAGGAATAATGCCTGACAGGCTCACATACAACACACTAATTTTAGCATGTGTCAAGAGTGAAAAGTTGGATGATGCGATGCGATTTTTTAAGGAAATGAAGGAAAAAGCACAGAAATTCATTAATGATGATCTGTTTCCAGATATCATTACGTATACAACATTGCTCAAGGGTTTTGGGCAGGCAAAGGACCTCACTTCAGTTTTGCAAATAGTTCTGGAAATGAAATCATTTCACAAGTTATACATTGATAGAACTGCTTACACTGCAATAACTGATGCTTTACTAAAATGTGACTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAGATACTGAAGCAGGCTGGTTGGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTCGAGGAGATTATGATATAGTTAAAAATTTGCATAAGCGGATGTGGCCAGATTCTGCAGGAACCATCTTACTAGCTGCTCAAGAAGAAGCCGATCACCTTCTCATGGAAGCGGCACTGAATGCTGGCCAGGTTGATGTTGCTGTTGAAACTCTTACTGATATTGTTTCAAAATGGAAGGGCATATCCTGGACAAGTCGAGGAGGCATGGTTGCTTCTCGTATTGAGGCCATATTGGGATTCTCAAAGTCTGTATTCAGTCCTTTCTTACTTCCTCAGGTTTCACCTTCTGAACCGGTTGAGGGTTTGATGATACCATTTGAAGCAACGCGGCCACTACAAGGTACCATAAAGCTGGAGAAAGTGGTTATGCGTTTCTTTAATGATGCAGTTGTTCCTATTGTAGATGAGTGGGGCAATTGTACAGGGCTGTTGCACCGCAAAGACTGCAATCAGTTGGATGCTTCACTTTCAACAATGATGAGAAGCCCTCCTCCCAGTGTTACCACTTCAACATCTATTGGTCATGTAGTGGATTTAATTTTGGAGAAGCGGTACCCAATGGTTATTGTTGTAGATTTCACCAACTCATATGATACTTCATACAGCTCTAGAGCCGTTGGAGTTTTTACATCAGAACTATTGAATAGGCTTATCACTCCTCCTGTATCTAAATTTAAAGGGACAGACCATTCAGTCTACAGAAGATAA 1848 0.4248 MDNEAFSQRLLVVPLKMLRSHIFSSLTSPFYSKPLHSLHVPLSCSSSSSAPLRRRLVRIPYPSKTNLKSLTSRIVQLTRRKQLRQILYEIEVAKKHFGKLNTIVMNAVLEACVRCGDIDSALRIFNEMKNPKGCGADTVTYATILKGLGEARRIDEAFKLLESVENGTAMGSPKLSAPLIFGLLNALIEAGDLRRANGLLARYGFVLREGGNFSVSVYNILMKGYINSGCPHTAINMLNEISHQGIMPDRLTYNTLILACVKSEKLDDAMRFFKEMKEKAQKFINDDLFPDIITYTTLLKGFGQAKDLTSVLQIVLEMKSFHKLYIDRTAYTAITDALLKCDSVKGALCIFGEILKQAGWNPELRPKPHLYLSMMRAFAFRGDYDIVKNLHKRMWPDSAGTILLAAQEEADHLLMEAALNAGQVDVAVETLTDIVSKWKGISWTSRGGMVASRIEAILGFSKSVFSPFLLPQVSPSEPVEGLMIPFEATRPLQGTIKLEKVVMRFFNDAVVPIVDEWGNCTGLLHRKDCNQLDASLSTMMRSPPPSVTTSTSIGHVVDLILEKRYPMVIVVDFTNSYDTSYSSRAVGVFTSELLNRLITPPVSKFKGTDHSVYRR* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01803 615 PANTHER OS09G0431600 PROTEIN 45 607 IPR044781 -
Rops9g01803 615 Pfam Pentatricopeptide repeat domain 284 320 IPR002885 -
Rops9g01803 615 Gene3D Tetratricopeptide repeat domain 180 281 IPR011990 GO:0005515
Rops9g01803 615 Gene3D Tetratricopeptide repeat domain 58 168 IPR011990 GO:0005515
Rops9g01803 615 ProSiteProfiles CBS domain profile. 539 604 IPR000644 -
Rops9g01803 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Rops9g01803 615 Pfam PPR repeat family 215 262 IPR002885 -
Rops9g01803 615 Pfam PPR repeat family 101 148 IPR002885 -
Rops9g01803 615 SUPERFAMILY CBS-domain pair 478 572 IPR046342 -
Rops9g01803 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 167 IPR002885 -
Rops9g01803 615 Gene3D Tetratricopeptide repeat domain 282 457 IPR011990 GO:0005515
Rops9g01803 615 NCBIfam pentatricopeptide repeat 217 249 IPR002885 -
Rops9g01803 615 NCBIfam pentatricopeptide repeat 105 129 IPR002885 -
Rops9g01803 615 NCBIfam pentatricopeptide repeat 252 279 IPR002885 -
Rops9g01803 615 NCBIfam pentatricopeptide repeat 139 163 IPR002885 -
Rops9g01803 615 NCBIfam pentatricopeptide repeat 293 321 IPR002885 -
Rops9g01803 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 131 IPR002885 -
Rops9g01803 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01803 Rops-Chr9 32335829 32346207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01803 183 431 Miscellaneous Gene Families AT4G11690 24.016 1.18e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01803 - - gmx:100813146 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01803 9 32335829 32346207 Rops9g01803 9 32335829 32346207 ECH