Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01795 ATGTCATCAAAACCAGGCATGTATGAACCAAAAAATATCCTCATTACTGGAGCAGCTGGTTTCATAGCTTCCCATGTTACTACCAAACTAATTAACAAGTACCCTAGCTACAAGATTGTAGCCCTTGATAAGCTAGACTATTGCTCTACCTTCAAGAATCTGCAGTCATGCACCTCATCACCAATGTTTAAATTCATCAAGGGTGATATAGCAACTGCTGATATTGTGAATCATATTTTGATAGAAGAGGAAATAGACACCATTATGCATTTTGCTGCTCAAACCCACGTGGATAACTCATTTGGAAACTCCATGGAATTCACCTACAATAACGTATATGGCACCCATGTGCTTCTTGAAGCCTGCAGGGTCACCAATTGTGTTAAAAGGTTCATCCATGTTAGCACTGATGAGGTTTATGGTGAAACTGACTTAAAGACTGAAATTGGGAATCATGAGGCATCTCAACTTCTGCCCACCAATCCTTATTCTGCAACAAAAGCAGGTGCTGAAATGTTGGTCATGGCTTATCATAGATCTTATGGTCTTCCAATTATAACATCTAGAGGCAATAATGTTTTTGGTCCTAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTTGCCATGAAAGGTGAGAAATTGCCAATTCATGGTGATGGATCCAATGTGAGGAGCTATCTCTATTGTGGAGATGTGGCTGAAGCATTTGATGTCATACTTCATAAAGGAACAATTGGCCAAGTTTACAATATTGGCACTAAGAAGGAGAGGAGTGTGTTAGATGTAGCAGAGGACATTTGCAAGCTCTTTGGATTGAACTCAAAAGAAGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGACAAGAGATATTTCTTGGACGATCAAAAACTAAAGAATCTTGGTTGGGAGGAGAGCACTCCTTGGGAGGAAGGACTTAAGATGACAATTGATTGGTACAAAAAAAACCCTGATTGGTGGGGTGATGTATCTACTGCTTTGAACCCACATCCACGTTTCTCAGCTATTAATCTCTCTGATGAAGCTCAATGGTCCTTTCAATATGGATACTCGAGGCTATTGAGGTCATATACAGAAGTTGGTCGTGTTAATTCAAGGTTGAAATTCTTGATATATGGTAGGACAGGTTGGATAGGAGGGTTGTTAGGAAAGCTTTGTGATGAAGAGAGAATAGCTTGGGAATATGGGAAAGGAAGATTGGAAGATAGGAAATCACTTATGGAGGATATAAGTAGGGTAAAGCCAACTCATGTGTTAAGTGCAGCTGGTGTTACTGGAAGACCAAATGTTGATTGGTGTGAATCACACAAAGTTGAAACAATAAGGACTAATGTGGTGGGAACCTTAACACTGGCTGATGTCTGCAAGGAACATGGGTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGATCATCCTCTAGGATCAGGCATTGGGTTCATGGAGGAGGACAAGCCAAATTTCACTGGTTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGACCTCCTAAAAAATTATGATAATGTCTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGGAACTTCATCACAAAGATTAGTCGTTACAACAAGGTGGTAAACATACCTAACAGCATGACAGTGCTAGATGAGCTCTTACCCATATCAATTGAGATGGCTAAGAGGGACTTAAAAGGTATATGGAACTTCACCAACCCAGGAGTCATAAGCCACAATGAGATATTAGAATTGTACAGGGATTACATAGACCCTCAATTTAAATGGGAGAATTTTAATTTGGAAGAACAGGCAAAGGTGATAGTTGCTCCTAGGAGTAACAATGAAATGGATGCCTCCAAGCTCAAAAATGAGTTCCCAGATTTGTTGTCCATCAAAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1986 0.3943 MSSKPGMYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKLDYCSTFKNLQSCTSSPMFKFIKGDIATADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNVYGTHVLLEACRVTNCVKRFIHVSTDEVYGETDLKTEIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVFGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLYCGDVAEAFDVILHKGTIGQVYNIGTKKERSVLDVAEDICKLFGLNSKEVIEFVQDRPFNDKRYFLDDQKLKNLGWEESTPWEEGLKMTIDWYKKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLLRSYTEVGRVNSRLKFLIYGRTGWIGGLLGKLCDEERIAWEYGKGRLEDRKSLMEDISRVKPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCIFEYDKDHPLGSGIGFMEEDKPNFTGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRDLKGIWNFTNPGVISHNEILELYRDYIDPQFKWENFNLEEQAKVIVAPRSNNEMDASKLKNEFPDLLSIKDSIIKFVFEPNKKT* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01795 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Rops9g01795 661 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 368 661 - -
Rops9g01795 661 Pfam RmlD substrate binding domain 378 548 IPR029903 -
Rops9g01795 661 Gene3D - 13 317 - -
Rops9g01795 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 342 - -
Rops9g01795 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Rops9g01795 661 Gene3D - 370 661 - -
Rops9g01795 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Rops9g01795 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 334 IPR036291 -
Rops9g01795 661 Gene3D - 204 326 - -
Rops9g01795 661 FunFam UDP-glucose 4,6-dehydratase 13 215 - -
Rops9g01795 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 376 652 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01795 Rops-Chr9 32148549 32151133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01795 12 323 Miscellaneous Gene Families AT1G02000 25.373 7.03e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01795 K12450 - gmx:100776241 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01795 9 32148549 32151133 Rops9g01795 9 32148549 32151133 ECH