Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01794 ATGTCTCGTGTGTATGTGGGTAACCTTGATTCGAGAGTTACAGAGAGGGACCTTGAAGATGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGGAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTAGAACTTTCTCACAATTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCATGCGTGGTGGTTCAGGAAGGCGCCGTAGCCGCAGTCCACCTCGATTTCGTAGAAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGCAGTTTGTCACCCCGTGGACGCAGCTACAGCAGGTCACCTCCTTACCGTGGGCGTGAGGAGGTGCCATTTGCTAATGGAAATGGCCTGAGGGAACGACGCAGAAGCAGAAGTTGA 540 0.5204 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPFANGNGLRERRRSRS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01794 179 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Rops9g01794 179 SMART rrm1_1 3 69 IPR000504 GO:0003723
Rops9g01794 179 SMART c2hcfinal6 90 106 IPR001878 GO:0003676|GO:0008270
Rops9g01794 179 CDD RRM_SRSF3_like 3 71 - -
Rops9g01794 179 MobiDBLite consensus disorder prediction 95 110 - -
Rops9g01794 179 MobiDBLite consensus disorder prediction 66 179 - -
Rops9g01794 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Rops9g01794 179 Pfam Zinc knuckle 90 105 IPR001878 GO:0003676|GO:0008270
Rops9g01794 179 ProSiteProfiles Zinc finger CCHC-type profile. 90 105 IPR001878 GO:0003676|GO:0008270
Rops9g01794 179 FunFam Serine/arginine-rich splicing factor RSZ22A 87 147 - -
Rops9g01794 179 Gene3D - 1 73 IPR012677 -
Rops9g01794 179 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Rops9g01794 179 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 159 - -
Rops9g01794 179 Gene3D - 86 143 - -
Rops9g01794 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Rops9g01794 179 SUPERFAMILY Retrovirus zinc finger-like domains 80 107 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01794 Rops-Chr9 32142480 32146251 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01794 K12896 - gmx:100796961 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01794 9 32142480 32146251 Rops9g01794 9 32142480 32146251 ECH