Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01572 ATGAGAGCCGCGGTTGAAGGATCCATAGCTGAGAGGTTTGATGATGGGGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGAACCAAACAAAACCCTCCCTCATCTTCAGCATCTGAAGTAAATGAGACCCCTGGGGTGTCGTCAGAATTTGAGGGAAAAAATGGAACACCTGCTCATACGACTGCATCCTTGAGCAATTCACTGAAGCAGCAGGGGGTTGATGTCTCTTCCACTAATGAACAAAGATTGTCCAAAGCATCAAATGTTGCTTTCATTTCAATGCCCCCTATGCATGTCAATGAGCAAATGGAACCTGTTGATTTGCAAAACATGCAAATGCATAGTGGGGGAATTGATTCAAAATCATTTTCTGAGCCCACTGGTTGCAGAGGGTCATCAGGAACTAATAAAAACAAAGACTCAGTCCATTGTGGTCAATATGGGCTTTGTGCCCAGAGAAATCATTTTAGTCCACACTGGTCTGCAGAGGCTGTTGAGAAGGCATTAGAGAGAGGTGATGTTTTAAAAGCTCTCTTTCATGTCAACGCTCACAATAGACTTGAGGCCTACTGCAAAATTGATGGATTACCAACAGATGTTCTTATTGGTGGGATTCTGGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCATTTGCCATTGTGGACGAAAATGAAAGGACCAAACGGGAATTGCAACAATGCTGCAACACTGGGAGGTTGTAACCTTCTTGCCGAAGATAATGAAGTGGGTGATAACAATTGTAAAGGAAAAGGTAAGGTAGATGCTGATTATGAGCCTGCCCATTGCAGAAGCAGTCCTGGTCTAAACAGGGAGGATTCTGATCACAATGCCACCCCTTATAAGGGTCATCCATTTCCTGAAAAAAGATACAGTTATGAGGATAACCTTTCTCTGGGTTCAATCAATCATTTAGATCCACACGGACTAGCCAGCCGGCATAGTATTGATGGACATCACGGTGCTGCATCTGATTCCTTAAAGATCAATTCTTTTAGTGGACAGAGTGAAGTAATTAATGCACTGGAGAAGATGTGTTCGTTGGTTAATTCTTTCCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCTGTTATTGAGAAGTCTTCATGTCGGGAGGGTATTGTTGGTCATCTTAATGTGAAGCCGTGGGTTTCTTTCAAGGAAGTAAGCAAAAAAGATGCTAAGAAGAATAAGAATTTAGTTTCTGAGCATGAGTACATCCAGCTGACACCAACTGATCCAAAGTTTCCTAACATGATGCTTCTTGTTAGAGAGTTACCAGATTGCATTAAAAAAAGGCTGAGAAGTGGTGATGTAACAATTGAAAGGGATCTGGTAGCTGCACGAATTGATGATTGGGTTGAAGAAAGTCCTTTTCCTGAGGGTCACATCTTGCATGTTTTTGGACGAGGTGGTGAAGTTCAGCCCCAATTAGATGCAATATTGTTTCAGAATGCAATCTGTTTGTCTGAATTTTCACCTGAATCTCTGTCCTGCCTGCCATGTGTTCCTTGGGAGTTGCCGCTAAAGGAAATGCAAAGTAGAATAGATCTTAGAAATTTGTGTATATTTACTATTGATCCTTCAACTGCAACTGATCTGGATGATGCATTGTCAATTGAGAAGTTACCTAATGGAAATTATAGAGTTGGTGTCCACATTGCTGATGTATCATACTTTGTTGAACCGGACACGGCTTTAGATAGGGAGGCTCAGTTTAGGTCAACAAGTGTTTATATGTTGCAAAGAAAGTTACCTATGTTGCCTGCGTTATTTTCAGAGAATATTGGTTCACTTAATCCTGGAGTGGATCGCCTTGCTGTTTCCATGCTTCTGGATATAAATCTTGCTGGGGATGTTGTAGACCGTTGGATTGGTCGCACTGTTATTCAATCTTGTTGTAAGCTTTCATATGAACATGCTCAGGACATAATTGATAGGGCTTTTGACTTTGAAAGTTCAAACTTTTATGAAGATGACTATCCGAAAGTGCATGGCCGTTTTGAATGGCCTGATGTTATTACGTCTTTGAAGAGTCTATATGAAATTTCAAATGTCTTGAGACACAAGAGGTTTTCTGATGGAGCTCTGCGGCTTGAAAACCCTAAAGTTGTTATCCTGTTTGATGAAAATGGAATTCCTTATGATAGTATGTTTCGGAAAGAATCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATATAACAGCAGCTGAAGTCATAAGTAGAGCTTATCCTAACATTGCATTATTGCGGAGGCATCCTGAACCTAATGTGCGGAAACTGAGAGAGTGTATGGCATTTTGTCAGAAGCATGGTTTAGAATTGTTGGATACATCTTCATCTGGTCAGTTCCATTGGTCATTGGAGCAGACAAAGGAAAAGCTCAAGGGCGACCCTGTGCTTTATGATATACTTATTAACTATGCTACAAGGTCAATGCAGTTGGCGTCTTACTTCTGTAGTGGAGATTTAAAGGACAATGAACATGAATGGGGTCATTATGCATTGGCTGTCCCTTTCTACACTCATTTTACATCACCTTTGCGTCGGTATCCGGATATTGTTGTTCATCGGACTCTACTCGCTGTTGTAGAGGCTGAGGAGTTGTATATGAAGCATCAGAAAGCTTTGGAGGTTCACAAGGAAGTGGACGTGCAAAAAAGATGTTTCACAGGTATCAACTTTGATAAAAATGCTGCAGAATCGATGGAAGGTAGGGAAGCCTTATCTGCTGCAGCTTTGAAGCATAGAGTTCCATGTGCTGAAATACTTGCAGATATTGCTGCATATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACACGTGGTTTTTCCTGAAGAAGAAGGAGGTCATATTTTCAGAAGCAAGAATACTGGGACTAGGCCCAAGATTCATGTCAATTTATATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGAAGTTGAAGGCTTGACTGTGGAGTGGCTTGAGGCAACATCCAGTTTGGTGCTTAGCATGTGTACTGATAGGCGTGCATTTAGGAGGGGTGGCCCTTACAAGTGGAGGGCATTGGAAGAGGTTGCATTGCTTACTTGTCCATATAACCTGAAAGTTACCAAGGATAATTCTAATCCAAGTGATGCAATGAAAGTGGATGATGGTACATCTGCCAAGGACAGGAAGCCCATTTCCAGATTGGAAACTTCTGAGACCGAAGTTGACCCTGCAGTTTTTCCACTCACAGTGCGTCATCTTTCAACAATTCCAGTAGCACTTCATGCTATTGGTGGAGATGATGGGCCCCTTGATATTGGAGTGAGGCTGTACATGAGCTCCTATTTTGGGTAA 3408 0.4164 MRAAVEGSIAERFDDGEKEKKKKRRSNRRTKQNPPSSSASEVNETPGVSSEFEGKNGTPAHTTASLSNSLKQQGVDVSSTNEQRLSKASNVAFISMPPMHVNEQMEPVDLQNMQMHSGGIDSKSFSEPTGCRGSSGTNKNKDSVHCGQYGLCAQRNHFSPHWSAEAVEKALERGDVLKALFHVNAHNRLEAYCKIDGLPTDVLIGGILAQNRAVEGDIVAVKIDHLPLWTKMKGPNGNCNNAATLGGCNLLAEDNEVGDNNCKGKGKVDADYEPAHCRSSPGLNREDSDHNATPYKGHPFPEKRYSYEDNLSLGSINHLDPHGLASRHSIDGHHGAASDSLKINSFSGQSEVINALEKMCSLVNSFPSKRPTGRVVAVIEKSSCREGIVGHLNVKPWVSFKEVSKKDAKKNKNLVSEHEYIQLTPTDPKFPNMMLLVRELPDCIKKRLRSGDVTIERDLVAARIDDWVEESPFPEGHILHVFGRGGEVQPQLDAILFQNAICLSEFSPESLSCLPCVPWELPLKEMQSRIDLRNLCIFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVEPDTALDREAQFRSTSVYMLQRKLPMLPALFSENIGSLNPGVDRLAVSMLLDINLAGDVVDRWIGRTVIQSCCKLSYEHAQDIIDRAFDFESSNFYEDDYPKVHGRFEWPDVITSLKSLYEISNVLRHKRFSDGALRLENPKVVILFDENGIPYDSMFRKESNFLVEEYMLLANITAAEVISRAYPNIALLRRHPEPNVRKLRECMAFCQKHGLELLDTSSSGQFHWSLEQTKEKLKGDPVLYDILINYATRSMQLASYFCSGDLKDNEHEWGHYALAVPFYTHFTSPLRRYPDIVVHRTLLAVVEAEELYMKHQKALEVHKEVDVQKRCFTGINFDKNAAESMEGREALSAAALKHRVPCAEILADIAAYCNERKLASRNVKDACDKLYTWFFLKKKEVIFSEARILGLGPRFMSIYIQKLAIERRIYYDEVEGLTVEWLEATSSLVLSMCTDRRAFRRGGPYKWRALEEVALLTCPYNLKVTKDNSNPSDAMKVDDGTSAKDRKPISRLETSETEVDPAVFPLTVRHLSTIPVALHAIGGDDGPLDIGVRLYMSSYFG* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01572 1135 MobiDBLite consensus disorder prediction 1 84 - -
Rops9g01572 1135 FunFam DIS3-like exonuclease 2 148 249 - -
Rops9g01572 1135 MobiDBLite consensus disorder prediction 1063 1089 - -
Rops9g01572 1135 ProSitePatterns Ribonuclease II family signature. 849 873 IPR022966 -
Rops9g01572 1135 MobiDBLite consensus disorder prediction 273 301 - -
Rops9g01572 1135 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1110 IPR028591 GO:0000175|GO:0034427
Rops9g01572 1135 Pfam Dis3-like cold-shock domain 2 (CSD2) 420 499 IPR041505 -
Rops9g01572 1135 Gene3D - 152 243 - -
Rops9g01572 1135 Pfam RNB domain 529 880 IPR001900 GO:0003723|GO:0004540
Rops9g01572 1135 Gene3D - 401 487 - -
Rops9g01572 1135 SMART RNB_2 529 882 IPR001900 GO:0003723|GO:0004540
Rops9g01572 1135 MobiDBLite consensus disorder prediction 1072 1088 - -
Rops9g01572 1135 PANTHER RIBONUCLEASE 21 1132 - -
Rops9g01572 1135 MobiDBLite consensus disorder prediction 7 21 - -
Rops9g01572 1135 MobiDBLite consensus disorder prediction 31 84 - -
Rops9g01572 1135 FunFam DIS3-like exonuclease 2 405 487 - -
Rops9g01572 1135 SUPERFAMILY Nucleic acid-binding proteins 456 972 IPR012340 -
Rops9g01572 1135 SUPERFAMILY Nucleic acid-binding proteins 156 381 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01572 Rops-Chr9 27275830 27284204 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01572 K18758 - gmx:100817387 1827.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01572 9 27275830 27284204 Rops9g01572 9 27275830 27284204 ECH