Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01560 ATGGAGACTCTGAATCATGTTCTGTCACTAGTAGAAGCATTTAGAGCTTTCGACGCAGACAATGATGGGCGCATCACAGAGGCCGAGCTAGGTGGAATCATGGGGTCACTTGGGTACAATGCTAGTCAACAAGAAGTGAGGGCAATGATGCAACAAGCAGACAAGAACAAAGATGGGTTACTAAGCATAAATGAGTTCTTGGAGCTGAACACAAAGGATTTGGAAACTGAGAATCTTGCAAATGTCCTTAGTGCAGCATTTGAAGCATTGGATGAAGATGGGAATGAAATTTTGACAGGGGAAGAGCTACATGAGGTTATGGAAAATTTAGGTCTAGGGTTGTCTCTAGAAAAGTGTCAAAATGTTGTTACTTCTCTAGATGTGGATGGAGATGGAGCTGTGAGCTTGGATGATTTCCGACTCATAGTTGAATCCCTCCTGTAA 444 0.4279 METLNHVLSLVEAFRAFDADNDGRITEAELGGIMGSLGYNASQQEVRAMMQQADKNKDGLLSINEFLELNTKDLETENLANVLSAAFEALDEDGNEILTGEELHEVMENLGLGLSLEKCQNVVTSLDVDGDGAVSLDDFRLIVESLL* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01560 147 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Rops9g01560 147 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Rops9g01560 147 ProSiteProfiles EF-hand calcium-binding domain profile. 114 147 IPR002048 GO:0005509
Rops9g01560 147 CDD EFh 10 69 IPR002048 GO:0005509
Rops9g01560 147 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Rops9g01560 147 PANTHER CALCIUM BINDING PROTEIN 10 68 - -
Rops9g01560 147 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Rops9g01560 147 FunFam Calmodulin-3 2 145 - -
Rops9g01560 147 Pfam EF-hand domain pair 11 68 IPR002048 GO:0005509
Rops9g01560 147 Pfam EF-hand domain pair 82 141 IPR002048 GO:0005509
Rops9g01560 147 SMART efh_1 82 110 IPR002048 GO:0005509
Rops9g01560 147 SMART efh_1 45 73 IPR002048 GO:0005509
Rops9g01560 147 SMART efh_1 9 37 IPR002048 GO:0005509
Rops9g01560 147 SMART efh_1 118 146 IPR002048 GO:0005509
Rops9g01560 147 SUPERFAMILY EF-hand 5 142 IPR011992 -
Rops9g01560 147 ProSitePatterns EF-hand calcium-binding domain. 18 30 IPR018247 -
Rops9g01560 147 Gene3D - 9 68 - -
Rops9g01560 147 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Rops9g01560 147 Gene3D - 69 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01560 Rops-Chr9 26847090 26847704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01560 7 143 EF-hand Containing Proteins AT1G24620 35.766 1.00e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01560 - K02183 gmx:100782291 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01560 9 26847090 26847704 Rops9g01560 9 26847090 26847704 ECH