LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g01527	ATGCTATGGATAATATTAGAATTGATTTGCATTACAAAAAATGATGTCGGATGTTATCTTTCTGATGATGTTGTGCAGTTGTGGAGGATAAACGAGGTTACTTTCAGATTCAGGGTGTTCAACAAACAGTTTGTAGGGTTAGATGTGATTAACGTGGTTGCTGTTACCAATACTTCCACTGATTCTGCGACATTTCATGTTGTCAAGGAAAGTGACAATTCAAACCGCATTCGAATCAAAACATCAAATGGATACTTCTTGCAGGCGAAGACAGAGAAGCTGGTAACTGCTGATGTTAAAGAGGTTAGAGGATGGGAAGATAATGATCCCACCGTTTTTGAAATGACAATTGCTGCAAAGTTGCAAGGCAAATTCCAAGTAACTAATGGTTATGGGTCCACTAAAGCTCCACAAGTTATGAAGGAACATTGGAGCACTTTTATTGTTGAAGATGATTTCAAGTTCATAGCCAGTAATGGATTAAATGCTGTTCGAATTCCCATTGGTTGGTGGCTAGCGAGTGATCCAACTCCACCCTCGCCTTATGTTGGGGGTTCCTTGAATGCACTAGACAATGCCTTCTTGTGGGCACAGAAATATGGATTGAAAATCATCATTAATCTTCATGCTGCACCCGGTTCTCAAAGTGGCAGGGAGCACAGCTCTTCCAGGGATGGTTCTCAAGATTGGGGAAAAACAAATGAAAACATTCAACAAACAGTTCAAGTTATAGACTTCCTAACTGCAAGGGTTGAGAGGTGTGTGGATGTGGCTGATGAGATGGTTGGTAGGGCTGAGACTGTGGATATGAATGAGATGGTTGGTAGGGATGAGACGGTGGATATGGCTGAGATGGTTGGTAGGGCTGAGATGGTGGGTATGGCTGAGATGGTGGGTATGGCTGGGATGGTGGGTATGGCTGAGACTGTGGGTATGGCTGAGACTGTGGTTGAGCTCTTAAACGAGCCTTGGTCACCTGGTGTGACATTAGAGAGCTTGAACAAGTACTACAAAGCTGGTTATGAAGCAGTGCGCAATCACTCCTCCACAGCTTATGTGGTGTTGTCAAATAGGCGAGGAGAACCCTCGAATCCAAGGGAACTCTTCCCTCTTTCTAATGGCCTTATACGATCTGTGATTGATATCCACTACTACATCGTCTATGATGATTCATTTGAAAACGCCACTGTTCAACAGAACATTGATTTCATTTACACCAACCGTTCATCAGAGTTGAATTATGTCACAACCTCAAATGCCCCTCTTATTTTTGTAGATGACTCTAATCCTTCCACACAAACCTTATGGAATGATGACCCTCCTCTCATTGATGAATCTATCATGGGTATGCATGATGCAAGGGGGAGCAGAAACATTGAAGAAAGTGTTGGGGATGCACAAGATGTGATTTTGACCCAAAGACAGTCAGGTGAGGCTTCTGTGTCAACAACTCACGTGAATGAACAACTTGGACGTGGTCACAGGGAACGTCACCCATCGAGCAAGCTAAAAGATTATATATGCCACACTCTGGGACGTGAAGAGGTTAGGACAAAGATCAAGTACATCCATCTAATGATGAGGAGCTGCATCAGCCTCAAAATCTGGCTTCTTAATTTGCTAACCTTTTCAAGCATGCTTTCCTTGTCATTTGCAAGACCAAATGCCGAGTTTCGAGTGAAAGCAGTTAATCTGGGTGGTTGGTTGGTTGCTGAAGGTTGGATGAAACCTTCTCTCTTTGATGGCATTCCAAATAAGGACTTCTTGGATGGAACTGGTCTTCAGTTCAAGTCTGTAACAACAGGGAAATATCTTTGTGCTGAGTCTGGAGGAGGAACTATCCTTGTTGCAAACCGCACTGCTGCTTCGAGTTGGGAAACATTCAGATTGTGGAGGATAAACGAGGTTACTTTCAGATTCAGGGTGTTCAACAAACAGTTCGTGGGGTTAGATGGGATTAACGTGGTTGCTGTTTCCAATACTTCCACTGATTCTGAGACATTTCATGTTATTAGGGAAAGTGACAATTCAACCCGTGTTCGAATCAAAACAGCAAATGGATACTTCTTGAAGGCAAAGACAGAGGAGCTGGTAACTGCTGATGTTTCAGAGGTTAGAGGATGGGGAGATAATGATCCCACCGTTTTTGTAATGACAATTGCTGCAAAGTTGCAAGGCGAATTCCAAGTAACGAATGGTTATGGGCCCACAAAAGCTCCACAAGTTATGAAGGAACATTGGAGCACTTTTATTGTTGAAGATGATTTCAAGTTCATAGCCAATAATGGATTAAATGCTGTTAGAATCCCCGTTGGTTGGTGGATAGCAAGTGATCCAACTCCACCCCCACCTTATGTTGGGGGTTCCTTGAACGCACTAGACAATGCCTTCTTGTGGGCACAGAAATATGGGGTGAAAATCATCATTGATCTTCATGCTGCACCCGGTTCTCAAAATGGCTATGAGCATAGCTCTTCAAGAGATACTTCACAAGAATGGGGGGAAACAGATGAAAACATCCAACAAACAGTTCAAGTTATAGACTTCCTAACTGCAAGGTATGCAAAAAGCCCAAGCCTTTATGCAGTGGAGCTTTTAAACGAGCCTCTCTCACCTGGTGCCACATTAGAGAGCTTGAACAAGTACTACAAGGCTGGTTATGAAGCAGTGCGAAAGCACTCCTCCACAGCTTATGTGGTGTTGTCAAATAGGCTAGCAGCTTCAAACCCCAAGGAACTATTCCCTATTGCCAATGGCCTTATGCGATCTGTAATTGATGTCCACTACTACAACCTCTTCAACGATATATTTAATCAAATGACTGTCCAACAGAACATTGATTTCATTTACACCAACCGTTCATCACAGCTGAATTTTGTCACAACCTCAAATGGCCCTCTTACTTTTGTTGGTGAATGGGTTGCTGAGTGGCAAGTTAAAGGGGCTACAAAAGAAGACTACCAAAGATACGCCAAGGCCCAATTAGACGTTTATGGGCGAGCAACATTTGGGTGGGCTTATTGGGCATTCAAAAGCGTCAACAACCACTGGAGTCTGGAGTGGATGATCAACAATGGATATATCAAGCTTTAG	3093	0.4319	MLWIILELICITKNDVGCYLSDDVVQLWRINEVTFRFRVFNKQFVGLDVINVVAVTNTSTDSATFHVVKESDNSNRIRIKTSNGYFLQAKTEKLVTADVKEVRGWEDNDPTVFEMTIAAKLQGKFQVTNGYGSTKAPQVMKEHWSTFIVEDDFKFIASNGLNAVRIPIGWWLASDPTPPSPYVGGSLNALDNAFLWAQKYGLKIIINLHAAPGSQSGREHSSSRDGSQDWGKTNENIQQTVQVIDFLTARVERCVDVADEMVGRAETVDMNEMVGRDETVDMAEMVGRAEMVGMAEMVGMAGMVGMAETVGMAETVVELLNEPWSPGVTLESLNKYYKAGYEAVRNHSSTAYVVLSNRRGEPSNPRELFPLSNGLIRSVIDIHYYIVYDDSFENATVQQNIDFIYTNRSSELNYVTTSNAPLIFVDDSNPSTQTLWNDDPPLIDESIMGMHDARGSRNIEESVGDAQDVILTQRQSGEASVSTTHVNEQLGRGHRERHPSSKLKDYICHTLGREEVRTKIKYIHLMMRSCISLKIWLLNLLTFSSMLSLSFARPNAEFRVKAVNLGGWLVAEGWMKPSLFDGIPNKDFLDGTGLQFKSVTTGKYLCAESGGGTILVANRTAASSWETFRLWRINEVTFRFRVFNKQFVGLDGINVVAVSNTSTDSETFHVIRESDNSTRVRIKTANGYFLKAKTEELVTADVSEVRGWGDNDPTVFVMTIAAKLQGEFQVTNGYGPTKAPQVMKEHWSTFIVEDDFKFIANNGLNAVRIPVGWWIASDPTPPPPYVGGSLNALDNAFLWAQKYGVKIIIDLHAAPGSQNGYEHSSSRDTSQEWGETDENIQQTVQVIDFLTARYAKSPSLYAVELLNEPLSPGATLESLNKYYKAGYEAVRKHSSTAYVVLSNRLAASNPKELFPIANGLMRSVIDVHYYNLFNDIFNQMTVQQNIDFIYTNRSSQLNFVTTSNGPLTFVGEWVAEWQVKGATKEDYQRYAKAQLDVYGRATFGWAYWAFKSVNNHWSLEWMINNGYIKL*	1031

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g01527	1030	FunFam	Glucan 1,3-beta-glucosidase A	571	709	-	-
	Rops9g01527	1030	Gene3D	-	595	717	-	-
	Rops9g01527	1030	FunFam	Glucan 1,3-beta-glucosidase A	712	1030	-	-
	Rops9g01527	1030	SUPERFAMILY	(Trans)glycosidases	121	251	IPR017853	-
	Rops9g01527	1030	SUPERFAMILY	(Trans)glycosidases	558	1028	IPR017853	-
	Rops9g01527	1030	PANTHER	FASCIN	555	1030	IPR010431	GO:0007015\|GO:0051015
	Rops9g01527	1030	Pfam	Cellulase (glycosyl hydrolase family 5)	140	399	IPR001547	GO:0004553\|GO:0071704
	Rops9g01527	1030	Pfam	Cellulase (glycosyl hydrolase family 5)	743	1011	IPR001547	GO:0004553\|GO:0071704
	Rops9g01527	1030	SUPERFAMILY	(Trans)glycosidases	316	432	IPR017853	-
	Rops9g01527	1030	MobiDBLite	consensus disorder prediction	214	234	-	-
	Rops9g01527	1030	SUPERFAMILY	Actin-crosslinking proteins	22	106	IPR008999	-
	Rops9g01527	1030	SUPERFAMILY	Actin-crosslinking proteins	594	707	IPR008999	-
	Rops9g01527	1030	Gene3D	Glycosidases	110	440	-	-
	Rops9g01527	1030	MobiDBLite	consensus disorder prediction	212	234	-	-
	Rops9g01527	1030	Gene3D	-	20	109	-	-
	Rops9g01527	1030	Gene3D	Glycosidases	718	1030	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g01527	Rops-Chr9	26012564	26043803	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g01527	-		-	gmx:100790619	896.345

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops9g01527	9	26012564	26043803	Rops9g01527	9	26012564	26043803	ECH