Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01512 ATGTCTGACGAGAACGCTAGAAGGAGAGCGGAACAGCTGAAGGAGCAGTTTGAGGGAGGGCTAGGAACCTGGTTTAATGAGTCTTCTAATCCTAATGTTCAACCATCATCATCCTCATGTCTCAACTTTATTGGCGGTTGTGGTTTCTCTTTTACGTCGCAATCTTCTTCTCCTTCGAACCCTTTCTCCCAAAGGTTACCAAACGATTGGGTTTATGATGATTACTATAATGTGTTGTCCAAGGATTTTTCTGGAATGAGTATTTTTGATGAACAAGGGAATGATGCCAAAACAAGGGGACAAGGTGTTGTGGACTCATATCCATACACATATCCACAAACCCCTTATTCTTCTTTGGATGCTTCACATGCATACAACAACATTCCAGAAGAAACTGTTTTCCCATGTCAGCAACAACGCACACCCAATAATGTGGGTACCCCAAATTCTCCAAGGGGTGTTTCTGGTGCTTCTGGTTTGGTTCCTGAGGTGAAGTGGACATTGCCTCCTTTGGCCAAAGCACACCGTTTTGGACCCCAAGGAGAGTCTCCTCTTAGCCATGGCAACATGAATGGTTATGGACGTTGTCAACTGCAGAAGTCACCACCTTTAGCTTCACCCAACAACCCTTATGATTGTGGTCTGCGCTCACAGACACGGTCTTTTGGAATGGATGTGCAAACTCCCTATATGTTTTCTCAAACCATGCAACCAGAGCTTGGTTTGAATACAAATGCTCCATCATCATATTATTTCCCTGCAGCAAGAGAAACTTCAACTACCCAGAGGGAACTTCCTCGATCTCTCTCTCCCAGGAGAGTTAGAGGGAGCTCTATGGCGTTTAAATGTGATAATAGTTTTATCATACAAGATAAAGACATGAAACGTTATGCTGATAGTGGGTGCAATTCTATGTGGGGTACCAGAAAGTTTGCAACCCGTAATGGGGTTGTATTCGCAAGTCAAGTTGTTGGAGAGGAAGTTCCTCAGTTAATTTCTCGTGTTGTTCCTATTGGTGGCATTGAAAATAGTAGCACTCTTGCAAGTGATGTGACGCCTCCATTGTTGCATAATTTTGATTCTTGGGATAAGTTCCAAGGTAGCATGTATTACATAGCAAAGGATCAGAATGGTTGTCGTTCACTACAGAGGATGGTTGATGAGGGAACCCCTGAAGATAGGCAAAGAGTGTTCAATGGAGTCATTGATTATGTTGTTGAACTAATGACTGACCCTTTTGGGAATTATCTTGTGCAAAAGTTGTTGGATGTATGCAGGGAAGATCAAAGGTTGCAGATTGTGCTAATGTTGACTAGAGAACCAGGGAAACTAGTCAGAACCTCTTTGAACTCACACGGAACACGCGTGGTTCAGAAGTTGATTGGGACCCTCAACTCTAGGCAACAAATTTCGTTAGTGAGGTCTGCCATTCAGCCTGGTTTTCTTGATCTTATTAAGGATTTGAATGGAAATCATGTCATACAACGTTGCTTGCAATGCCTCAGCCCTCAAGATAATGAGTTTATTTTTGATGCTGCTGCAAAGTTTTGTGTTGAAATAGCTACTCATCAACATGGCTGCTGTGTACTGCAACGTTGCATTGATCATTCCACGGGAATGTGTCAAGATAAGCTGGTGAAAGAAATATGTAGACATGGGCTTCTCCTTGCTCAAGATCCATATGGTTTTAGTGATGCAACAAGTTTAGGATGTAATAAATCTTCTCATTACTTAATTTGGGATAAGATGTTAGTTCCTTACGCAATTTGTATGCGATCAGCTCATCAAAGTAACACTTTCAATTTGTCATCTCGCAGAAATTATGTTGTTCAATATATTATAGAGATGGATAACCCAAGTGCTACAGCCAAACTGCTTTCTCAGTTCAAAGGGAACTACGTAAACCTCTCCATGCAAAAATTTAGCAGTCACGTGGTTGAAAAATGCCTCAAGGAGGTCCAAGAGAGCAGATCCAGGATAGTCCAAGAATTGCTGTCTGTTCCTCACTTTGAGCAGTTGATGCAAGACCCATATGCCAACTATGTTGTTCAACGGGCTCTTTCAGTGGCCAAGGGCTCTCTACTTTCATCTTTGGTTGAAGCAGTTCGTCCCCACAAAATGTTGCGCACCAGCCCATATTGCAAGAATATTTTCTCAAAAGATCTCCTTAAGAAGTAA 2178 0.4219 MSDENARRRAEQLKEQFEGGLGTWFNESSNPNVQPSSSSCLNFIGGCGFSFTSQSSSPSNPFSQRLPNDWVYDDYYNVLSKDFSGMSIFDEQGNDAKTRGQGVVDSYPYTYPQTPYSSLDASHAYNNIPEETVFPCQQQRTPNNVGTPNSPRGVSGASGLVPEVKWTLPPLAKAHRFGPQGESPLSHGNMNGYGRCQLQKSPPLASPNNPYDCGLRSQTRSFGMDVQTPYMFSQTMQPELGLNTNAPSSYYFPAARETSTTQRELPRSLSPRRVRGSSMAFKCDNSFIIQDKDMKRYADSGCNSMWGTRKFATRNGVVFASQVVGEEVPQLISRVVPIGGIENSSTLASDVTPPLLHNFDSWDKFQGSMYYIAKDQNGCRSLQRMVDEGTPEDRQRVFNGVIDYVVELMTDPFGNYLVQKLLDVCREDQRLQIVLMLTREPGKLVRTSLNSHGTRVVQKLIGTLNSRQQISLVRSAIQPGFLDLIKDLNGNHVIQRCLQCLSPQDNEFIFDAAAKFCVEIATHQHGCCVLQRCIDHSTGMCQDKLVKEICRHGLLLAQDPYGFSDATSLGCNKSSHYLIWDKMLVPYAICMRSAHQSNTFNLSSRRNYVVQYIIEMDNPSATAKLLSQFKGNYVNLSMQKFSSHVVEKCLKEVQESRSRIVQELLSVPHFEQLMQDPYANYVVQRALSVAKGSLLSSLVEAVRPHKMLRTSPYCKNIFSKDLLKK* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01512 725 CDD Pumilio 372 720 IPR033712 GO:0003723
Rops9g01512 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 476 511 IPR001313 GO:0003723
Rops9g01512 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 400 436 IPR001313 GO:0003723
Rops9g01512 725 SUPERFAMILY ARM repeat 361 563 IPR016024 -
Rops9g01512 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 439 474 IPR001313 GO:0003723
Rops9g01512 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 663 700 IPR001313 GO:0003723
Rops9g01512 725 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 342 725 IPR033133 GO:0003723
Rops9g01512 725 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 137 720 - -
Rops9g01512 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 364 399 IPR001313 GO:0003723
Rops9g01512 725 SUPERFAMILY ARM repeat 607 719 IPR016024 -
Rops9g01512 725 Gene3D - 357 723 IPR011989 -
Rops9g01512 725 SMART pum_5 364 399 IPR001313 GO:0003723
Rops9g01512 725 SMART pum_5 628 662 IPR001313 GO:0003723
Rops9g01512 725 SMART pum_5 476 511 IPR001313 GO:0003723
Rops9g01512 725 SMART pum_5 439 474 IPR001313 GO:0003723
Rops9g01512 725 SMART pum_5 665 700 IPR001313 GO:0003723
Rops9g01512 725 SMART pum_5 400 435 IPR001313 GO:0003723
Rops9g01512 725 SMART pum_5 512 547 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 632 665 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 369 400 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 517 550 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 669 700 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 404 434 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 445 473 IPR001313 GO:0003723
Rops9g01512 725 Pfam Pumilio-family RNA binding repeat 481 511 IPR001313 GO:0003723
Rops9g01512 725 ProSiteProfiles Pumilio RNA-binding repeat profile. 512 547 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01512 Rops-Chr9 25457651 25462237 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01512 - - gmx:100788865 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01512 9 25457651 25462237 Rops9g01512 9 25457651 25462237 ECH