Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01428 ATGCGTGTGACAGTGGATCTAGGGTTTCCAAGCCTGGTCCTCGTCGCGGTGGTTTGCGTCGTCGTGCCGGTGATCGGCTTCGTGGTAAATCTTAAGTGGCGGCGTTCAGCGGCGAGGGCGGAGGAGGTCAGGAGGCTTCTGATTCTTGCGGCGGAGGAGTCTGCTAGGGCTGAGAGCGAGGCTTTGTACCAATACGATGTCGTTTCGGTCGTTAAGAAGAACAACCAATGCGCCGTGTGCTTTTGCCCCACCACCACACGGTGCGCAAGGTGCAAAGCGGTTCACTACTGTTCTGGTAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGAAGAATGCCATCCTCCCAGCACAACTCTCCAGACTGATGATCTGGTAAATGATCTTGGCAAGAAGGTAGCAGAGCCAAACTACAGTGGAATCCATGATGAGAAGTCTCAGATTGAAAGAACAGAGTATACAACATCCTCGGAGAAACCCCCATTGTCTGATATACGCTCTTCTCCCGAAAGTTCAGAAAACATAAGAGTTGAGCCTCTTGCAGAGGGAAATATTAAAGACTCTAATTCCGAATTATCAAGTAACTCATTTTCTGGATTCTCAGCTTCCACCAGTGCTGGTGAATCATCTGATGATTCCACTGTTTGTGAGAGTATCTCCTCAAATGAGCATGAGAGATCCGAGGGACATGTTTTTGCTGACCGCAGTGATGACATTTCTGAGACCACCTCAGATGGTAAAAGCATGGGTGCAACCATTTCGTTGTCACCTAAGTTTGCTAGTTTGGTTGATTCAGTTGATGGGTTTTCCACAAAGCATAAATTAAATCAAGTTAGACCTGGTTTTGGTAATGAAAAGATTAAGCTCACATCAAATAGTAGTTCGGGTTTGATGATGTCGAAGGGGGCAACAATGGAGCCTTCTCCAGTGTCTTCTGGATTCTGGGATAAAACTCTTGATTCAAGGGGGGTGAAAGATGGTTCTTATGGTGACCCTCTTCCATCCCACTCTAATGATTCTCTTCCAAATTCTATTGGGAACAATATGGCAAGTGCAGGATTAGCATCTTCAAAGAATGAAGGTGTTGATTCTTCAGGTTGTGCTGATGCTTCGAGCATCCATAACTTGCAAACTGTTGGCTCTAAGGTGTCAAATCATGTTATGATCAACCCTGGCAGCAGCTTGAAGTCAGCTGAAATTAGATGTCTGCCACGTACATTTGCTGATACTAAGTTAGTTTCTAGAACTGAAGAGCATTCACATTACAGTACAAAATGTGGGAATGATGGCATCCAATCTGGCTCTGCTACTTCATCCCAGGTTGCTAGCTGTTCTCCAAATTCTAAGAATGGCCTGAAGACATCTGTTATGAAAGTTGTTGATCAGTTTAGAGGATCAAATTTGTCTAAAAATTTTCCACTGGCTGTTGGGAGTGATGTGGCTGGAAAGTACAGTGACAAGGGTCTTTTTCCGTATGATTTGTTTGTCAGGCTTTATAACTGGAACAGAGTGGAGTTCCGACCATTTGGTCTTATAAATTGTGGAAACAGCTGTTATGCTAATGCTATACTCCAGTGCTTGGCATTTACACCACCCCTGACTGCTTATTTGCTCCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAGTTTGGAAGTTTGATTTTGACGTCAAAAGACACAAAATCTCCCCTCTCACCTATGGGCATACTCTCTCATCTACAGAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGACACGTGGTTGAGACAATGCAATCTGTTTGCCTTATGGAATCTGGAATTAATACATCAGACTCATTAAAAGAGGAAACCAATTTAATGGGTCTAACATTTGGAGGCTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATAGCAACCCTGGAGGAGGCCCTTCGTCAGTTTACAAGCACCGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAAAAGAAAATGACAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTAAGTCTGGAAAATTTGGGAAGCTCAATAAGCCTATTCGGTTTCCTGAAATACTTGACCTGGCACCTTTCATGAGCGGGACAAGTGATTTGGCTATATACAGGCTGTATGGGGTAGTTGTTCATTTGGACATCATGAATGCTGCTTATTCAGGTCACTATGTGTGCTATGTGAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGACAGTGTGGTGACACCTGTTGAATTGGAAACAGTCTTGACAAAAGGAGCATACATGCTTTTATATGCAAGGTGCTCACCTAGGGCCCCAAGATCAATCAGGAACATGATAGTATCCTCAGATTCAAAAAATAAAGTCAATGGAAAAACTGTTACAATGAAGTCAAGATATGTATCATCAGATTCTGGTGCTGCTGAAAGCATGACTAGTTCGTTTTCTCCCAATGGTTCACCCGCCTTAGAGACTATGTATTCGAAGTTTCACCACATAAAAAGGATCTTGGAAGAAGACTCATCAAGTGACAATTCTTCCCTCATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACTGACAGCACTTGCGATTCAACCAGTACAGATGACTATGCTGATTATATTTTTGGTAATTCGGGAGGAGGCTGGGTGGGCATGTTTAGAAATTCTGATTCTGCTGACACTTCTTCCACATTGTCATCTTCTCTCTTGAACTCTAGACATGTGCCTTTATCTGATTCAGTTTTCCCATATGCAACTGGGTTGCGACCACCTCCCACAGGTCCAAGTGGGGAGATAGACGGTCTTTTGTACAGAAGCAGACCGGTGGATGTTGAAAGGAGTAGGGGAGGTGTTTCTCATTTGCATGCTGACACCACTATAGGGCATAGGAAGTTAGATACAAGTAGGAGTAGAACTAGTTTTGGGGACACTGACTCTTTACACACAGCAGCATCCAACCATTCTAATTCTGGTGTATCATATAGAAAGTCAAAGGAAAGAACGGTTTGA 3153 0.432 MRVTVDLGFPSLVLVAVVCVVVPVIGFVVNLKWRRSAARAEEVRRLLILAAEESARAESEALYQYDVVSVVKKNNQCAVCFCPTTTRCARCKAVHYCSGKCQIVHWRQGHKEECHPPSTTLQTDDLVNDLGKKVAEPNYSGIHDEKSQIERTEYTTSSEKPPLSDIRSSPESSENIRVEPLAEGNIKDSNSELSSNSFSGFSASTSAGESSDDSTVCESISSNEHERSEGHVFADRSDDISETTSDGKSMGATISLSPKFASLVDSVDGFSTKHKLNQVRPGFGNEKIKLTSNSSSGLMMSKGATMEPSPVSSGFWDKTLDSRGVKDGSYGDPLPSHSNDSLPNSIGNNMASAGLASSKNEGVDSSGCADASSIHNLQTVGSKVSNHVMINPGSSLKSAEIRCLPRTFADTKLVSRTEEHSHYSTKCGNDGIQSGSATSSQVASCSPNSKNGLKTSVMKVVDQFRGSNLSKNFPLAVGSDVAGKYSDKGLFPYDLFVRLYNWNRVEFRPFGLINCGNSCYANAILQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFGSLILTSKDTKSPLSPMGILSHLQNIGSQLGNGREEDAHEFLRHVVETMQSVCLMESGINTSDSLKEETNLMGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALRQFTSTETLDGENKYHCVRCKSYEKAKKKMTVSEAPNVLTIALKRFKSGKFGKLNKPIRFPEILDLAPFMSGTSDLAIYRLYGVVVHLDIMNAAYSGHYVCYVKNFQSRWFKVDDSVVTPVELETVLTKGAYMLLYARCSPRAPRSIRNMIVSSDSKNKVNGKTVTMKSRYVSSDSGAAESMTSSFSPNGSPALETMYSKFHHIKRILEEDSSSDNSSLISSNSDEGSCSTDSTCDSTSTDDYADYIFGNSGGGWVGMFRNSDSADTSSTLSSSLLNSRHVPLSDSVFPYATGLRPPPTGPSGEIDGLLYRSRPVDVERSRGGVSHLHADTTIGHRKLDTSRSRTSFGDTDSLHTAASNHSNSGVSYRKSKERTV* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01428 1050 MobiDBLite consensus disorder prediction 219 243 - -
Rops9g01428 1050 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 1020 1040 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 294 308 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 154 175 - -
Rops9g01428 1050 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 511 526 IPR018200 GO:0004843|GO:0006511
Rops9g01428 1050 MobiDBLite consensus disorder prediction 887 912 - -
Rops9g01428 1050 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 510 814 IPR028889 -
Rops9g01428 1050 Gene3D - 67 116 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 334 368 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 138 153 - -
Rops9g01428 1050 Gene3D Cysteine proteinases 504 824 - -
Rops9g01428 1050 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Rops9g01428 1050 FunFam Ubiquitin carboxyl-terminal hydrolase 15 504 822 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 994 1050 - -
Rops9g01428 1050 Pfam MYND finger 77 114 IPR002893 -
Rops9g01428 1050 SUPERFAMILY HIT/MYND zinc finger-like 70 116 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 294 368 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 137 250 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 994 1019 - -
Rops9g01428 1050 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 199 817 - -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 888 912 - -
Rops9g01428 1050 SUPERFAMILY Cysteine proteinases 506 816 IPR038765 -
Rops9g01428 1050 MobiDBLite consensus disorder prediction 187 218 - -
Rops9g01428 1050 FunFam Ubiquitin carboxyl-terminal hydrolase 15 68 118 - -
Rops9g01428 1050 Pfam Ubiquitin carboxyl-terminal hydrolase 510 811 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01428 Rops-Chr9 23541787 23549413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01428 411 870 Miscellaneous Gene Families AT4G31670 42.827 1.53e-124 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01428 K11855 - gmx:100782303 1396.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01428 9 23541787 23549413 Rops9g01428 9 23541787 23549413 ECH