Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01405 ATGGTCTTCTCCCTCTCCACATTGTTTTATGTATATTTCTTTCCCACGAAGCTTTGTACTTTGGGTAGAAAGAAAAGAATAAGAACTGAAATTGAAGAAATGGGTTGGGAAGCTCTCTGTACAATCTTAACGAAATCACTCACCGTCCTTGCCTGGCCTCCGTTTAGTTTGCTATGTCCCTTGTATGTTTCTATTCGGGCAATGGAGAGTGATTCCCGCTCCTGCCATCAGCGATGCCTTGCTTTTTGGGTTCTGTTTTCCTTGTCTATGATCGTGGAAGGGGAACTTGCTGTGTTATTTAAATGGCTCCCATGGTGGCCTCATGTGAAAGCCATTGCAACTATCTTGTTATTGATACCTTATTTAGGTGCTGCACCGTATATCTATAAGTTCTTAATTAAACACTACTGTACTTGGAACATATCTACAAGGGCTTTGAACATCTTCAGTCAGAAAAGCACACATTTTGATTCGGATGAGGATAGCAAAACAATTTTCGAATCCGATGAGTATAGCAACCTTTTTGAGGTCTCTGACCAGGCAATTATTACAAGTCAAATACAAGAGGAGAAACTCATAGCATATCAGGGAAGAGAAGATCTTGCTGGTTGTGACAAGACTGAAAGCAGTTGCATAAGGCTAACTGGCGAGAAGCAAGTCCAGAAGGAATGGAGTTGTGCGTTATGTCAGATTAGTACTAGCAGTGAAAATTGCTTAGGGGCACATCTTCAAGGGAAGAAACACAAGACTATGGAAAAAGAACTTAGAGTTGAGTTACATGTAACGAATAGCTCATACGTGTTATCCTCTGCACAGAAAAGAATCAAAGGAATGGTTCTACTGAGGAATCTGAACCAAATTGCAAACATTCTGAGTCCAGTTACCAGACCCATAAGATGGTGTGAATGGACAAAGCCAGAGTTTGGGTGGACAAAATTAAATACTGATGGTTCTATACATAGAGAAGGTGCTGGTTTTGGTGGGCTGCTTCGTGATTACAGGGGTGAACCAATGTGTGCTTTTGTCTCTAAAGCTCCTCAAGGAGATGTTTTCTTGGTTGAGCTGTGGGCCATATGGAGAGGCCTTGTTCTCTCAGTGGATCTTGGGATTAAAGCAATATGGGTGGAGTCAGACTCCATGAGTGTTGTGAAGACAATCAATAGAAAACAACCTTCTTGTCCAAAAGCTGATAGCTGTTTGAGAAAAATCTGGAAACTCTTAAAAAAGTTTGATAAATATCAGATTTCTCATTCATGGCGTGAAACTAATAGAGCAGCAGATCATCTAGCAAAGATGGTTCTTTCGGGAAATGATGTAGTTCTCTGGCCAGTTGATTTTCCACATAGCCTTTACAATATCATTAAAGATGATGCCAAAGGGAAGAAATATCTTAGACGGTGA 1401 0.4069 MVFSLSTLFYVYFFPTKLCTLGRKKRIRTEIEEMGWEALCTILTKSLTVLAWPPFSLLCPLYVSIRAMESDSRSCHQRCLAFWVLFSLSMIVEGELAVLFKWLPWWPHVKAIATILLLIPYLGAAPYIYKFLIKHYCTWNISTRALNIFSQKSTHFDSDEDSKTIFESDEYSNLFEVSDQAIITSQIQEEKLIAYQGREDLAGCDKTESSCIRLTGEKQVQKEWSCALCQISTSSENCLGAHLQGKKHKTMEKELRVELHVTNSSYVLSSAQKRIKGMVLLRNLNQIANILSPVTRPIRWCEWTKPEFGWTKLNTDGSIHREGAGFGGLLRDYRGEPMCAFVSKAPQGDVFLVELWAIWRGLVLSVDLGIKAIWVESDSMSVVKTINRKQPSCPKADSCLRKIWKLLKKFDKYQISHSWRETNRAADHLAKMVLSGNDVVLWPVDFPHSLYNIIKDDAKGKKYLRR* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01405 466 Pfam Reverse transcriptase-like 314 432 IPR002156 GO:0003676|GO:0004523
Rops9g01405 466 Gene3D - 310 435 IPR036397 GO:0003676
Rops9g01405 466 Gene3D Classic Zinc Finger 215 262 - -
Rops9g01405 466 PANTHER OS05G0353850 PROTEIN 285 456 - -
Rops9g01405 466 CDD RNase_H_like 313 431 IPR044730 -
Rops9g01405 466 Pfam Zinc-finger of C2H2 type 224 248 - -
Rops9g01405 466 Pfam TB2/DP1, HVA22 family 60 135 IPR004345 -
Rops9g01405 466 SMART ZnF_U1_5 221 255 IPR003604 GO:0003676|GO:0008270
Rops9g01405 466 SUPERFAMILY beta-beta-alpha zinc fingers 216 257 IPR036236 -
Rops9g01405 466 SUPERFAMILY Ribonuclease H-like 310 442 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01405 Rops-Chr9 23080000 23082990 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01405 - - gmx:100787629 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01405 9 23080000 23082990 Rops9g01405 9 23080000 23082990 ECH