LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g01403	ATGGTAGATGATGTTACTACATGTTGCAGGTTGGATTTCCAACTTACAGCCCCTCCAAAGGCTGTAAACACATACCTTGGTATAAAAAGCCCCAAATTTCTACGCTCCCAAACGCTATCGAGCCAAACCCAAACGTTCACTGAGAAAGCACCAGCACAAGAAGAAGAAGAAGAAGAACCACTCCCAAGTCTCCAACGTCGCCACCCGATTTATCGTGTTTTTCAAGCTAGAATGGCGACGTTCGAATTGTACCGTAGGTCGACGATCGGAATGTGCCTCACCGAGACTTTGGATGAGATGGTTCAGAACGGAACTCTCAGCCCTGAACTTGCGATTCAGGTTCTCGTTCAGTTCGATAAGTCTATGACTGAGGCTCTGGAAACGCAAGTTAAGAGCAAGGTCTCCATCAAGGGACATCTCCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAATGAGGACACCCAAGAGAATGTTGGACGGGTTAAAATAGTGGCGTGTGACTCCAAGTTGCTCTCACAATAA	552	0.4547	MVDDVTTCCRLDFQLTAPPKAVNTYLGIKSPKFLRSQTLSSQTQTFTEKAPAQEEEEEEPLPSLQRRHPIYRVFQARMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDTQENVGRVKIVACDSKLLSQ*	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g01403	183	Gene3D	-	132	182	IPR009088	GO:0005672\|GO:0006367
	Rops9g01403	183	FunFam	Transcription initiation factor IIA subunit 2	132	183	-	-
	Rops9g01403	183	CDD	TFIIA_gamma_N	81	128	IPR015872	GO:0005672\|GO:0006367
	Rops9g01403	183	Pfam	Transcription initiation factor IIA, gamma subunit, helical domain	81	126	IPR015872	GO:0005672\|GO:0006367
	Rops9g01403	183	FunFam	Transcription initiation factor IIA subunit 2	79	131	-	-
	Rops9g01403	183	CDD	TFIIA_gamma_C	134	179	IPR015871	GO:0005672\|GO:0006367
	Rops9g01403	183	Pfam	Transcription initiation factor IIA, gamma subunit	137	178	IPR015871	GO:0005672\|GO:0006367
	Rops9g01403	183	SUPERFAMILY	Transcription factor IIA (TFIIA), beta-barrel domain	129	179	IPR009088	GO:0005672\|GO:0006367
	Rops9g01403	183	PANTHER	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	78	183	IPR003194	GO:0005672\|GO:0006367
	Rops9g01403	183	Gene3D	-	80	131	IPR009083	GO:0005672\|GO:0006367
	Rops9g01403	183	SUPERFAMILY	Transcription factor IIA (TFIIA), alpha-helical domain	81	131	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g01403	Rops-Chr9	23014664	23023311	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g01403	K03123		-	pvy:116137693	213.001

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops9g01403	9	23014664	23023311	Rops9g01403	9	23014664	23023311	ECH