Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01398 ATGGCTATGGCTTTGCGAAGACTCTCCTCCACCATCAACAAAACAAGTTCCACTTTCCCCAACGCATCTTCTGTTTATCGCATGTCTTCTTCGCTCTCCGCGCAAGAGAAAGACAAATCTAGCGCTGATTGGATAAAGCAACTCAACCATCCTCTCGAGGTTGTAGATCCTGAGATCGCAGACATAATCGAACTCGAAAAAGCTCGTCAATGGAAGGGGCTCGAACTTATACCTTCAGAAAATTTCACGTCGCTGTCAGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTATGTCAGAAACGAGCACTAGAAGCTTTCCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTTCTAACTTCCAAGTTTATACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTGTCTATATTCTTTGAAACAATGCCGTACAGATTGAATGAGACCACTGGTTATATTGATTATGACCAGCTGGAGAAAAGTGCTACCCTTTTTAGGCCAAAGTTAATAGTTGCTGGTGCTAGTGCTTATGCCCGCCTTTATGATTATGAACGTATTCGCAAGGTCTGTGATAAACAGAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACACAAGTCACTTCGTGGACCGCGTGGGGCCATGATCTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGAAAGGGCAGGAAGTGTTGTATGACTATGAAGATAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATCGCAGGCTTAGCAGTTGCACTGAAGCAGGCTGTGACACCAGAATTCAAGAATTACCAAAAACAAGTTCTTAGTAACAGCTCAACATTTGCACAGAGTTTGACAGAGAAAGGCTATGAACTTGTATCTGGTGGAACTGAGAACCATTTAGTATTAGTGAACTTAAGAAACAAGGGCATTGATGGCTCAAGGGTTGAGAAGGTATTAGAATCAGTTCATATGGCTGCCAATAAAAATACCGTTCCTGGGGATGTGTCTGCTATGGTTCCTGGAGGCATCCGAATGGGAACTCCTGCTCTCACATCCAGAGGTTTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGATAAGGCAGTCAAGTTAGCCTTGCAGATTAAGGGAAATTCTAAAGGTACAAAGTTGAAGGATTTTGTGGAAGCTATGCAGTCAGATTCACAAGTTCAATCTGAGATTGCTAAACTCCGTCATGAAGTAGAGGAATATGCTAAGCAGTTTCCCACAATTGGTTTTGAGAAAGAGACAATGAAGTATAGTAAGTGA 1545 0.4252 MAMALRRLSSTINKTSSTFPNASSVYRMSSSLSAQEKDKSSADWIKQLNHPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNETTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQAVTPEFKNYQKQVLSNSSTFAQSLTEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHMAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDKAVKLALQIKGNSKGTKLKDFVEAMQSDSQVQSEIAKLRHEVEEYAKQFPTIGFEKETMKYSK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01398 514 Coils Coil 479 499 - -
Rops9g01398 514 Hamap Serine hydroxymethyltransferase [glyA]. 51 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Rops9g01398 514 CDD SHMT 55 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Rops9g01398 514 PIRSF SHMT 32 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Rops9g01398 514 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 275 291 IPR019798 GO:0030170
Rops9g01398 514 Gene3D - 81 354 IPR015421 GO:0003824
Rops9g01398 514 SUPERFAMILY PLP-dependent transferases 45 505 IPR015424 -
Rops9g01398 514 Pfam Serine hydroxymethyltransferase 52 449 IPR039429 -
Rops9g01398 514 FunFam Serine hydroxymethyltransferase 342 502 - -
Rops9g01398 514 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 37 507 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Rops9g01398 514 FunFam Serine hydroxymethyltransferase 81 354 - -
Rops9g01398 514 Gene3D Aspartate Aminotransferase, domain 1 56 501 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01398 Rops-Chr9 22868857 22878471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01398 K00600 - gmx:100816213 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01398 9 22868857 22878471 Rops9g01398 9 22868857 22878471 ECH