Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00708 ATGTCTGGTTCTGATGATGGTAACAATAACATATTGCCCTACATTACACCAGATGAAGTCAAGGACTACCTAGCTGAGTACACATGGGAAGGTAAATGGGAAAAGGTTAAGGAGATGTATTCAGACTTTCCAGAGGCTCACACCACAATCATATCCGAATCCGAGGGTACTGCATTGCATGTGGTGGTAGATTTGGACGAAGAAGAGGTCGTGAAAGAGCTTGTGGATGCAATTCTCAAGTATGAAACTGATGTAAGGATTGAGGCTCTTGAAATGAAGAATGAGAGAGGGGATACCCCTTTGCACCTTGCAGCATCAAGGGGGTTCGCTAGATTATGTAAGTACATCATAGGAGATGATGGTAAGAGGATATATTTGCTGTGTCGTAAGAACAATGAAGGGGAGACACCTTTGTTTCAAGCTGCTATTAACTGGAGAAAACAAGCCTTTGCATACCTTGCTGACGTTTTAAAAGACAGAGTCACTTTGCTAGATCTTATACGTAACGATGGAGATAGTATTCTTCACTCTGCTATCAAGAGAGAATATTTTGATTTGGCTGTGATAATAGTGCATTATTATGATTTCCTCAGCACACATCTGAATGGAGAGGAAGCCACTCCTCTCAAAGTCCTTGCCACTAGGCCTTCGGCCTTCAGAAGTGCAAGCAACCTTTCATGGTGGAAGCAAATCCTGTACCACTGCATACTTGTGGAACCACTGGACCCTGCAAAGGCAATGAAATCGAATTTGAAAAAGATGGAGCAGACTCCAGATTCTGATAAAATGAAGTGCCCAGAGAACTACACCACGTTATTCGAGTTCTCTAAATGGTTAAGTATTGTCACTCCATTTGGCGAATTTCTCTCGAGAAAGAATCAGCCCGACCCAGAAAAACAATCAAACAATGAACAAAATAACAGCACAAGTGGAGGTCGTAAGTTTCTATCAGACCAATATCTGGTTGGATTTTTGCCACCAATTTATGAAACCGTTCATCTATTTGTCAAGTCTGCATATGTGCATATTCTTGGCCTTTCGGGAGTGGAGTTAAAGGATGTAAAGAAGACCAAGAAGAAGCACCAATGGAGTGGTCAACTATTGAAGGCACTAATGCAAAGATCTTATGCAGCTTTCACTGGAAGCGGGGGTCGACCAATTGATAAGGATGTTGAAGCAGATATGTATAATGTTTTTACTGAATGGAAGCAAGGTGAAACCAGCAAATTGGAGTGGTTGGAAGAAGAAAAACCAGTACCTTCAACTGAAAAAGACGCAAAGAAGGAAGAAAAATCAGAGGCCGATGGCAAAGAGAAACCTTCAACTGGAAAAGACACAAAGAAGGAAAATGAGGCTGGAGATAAAATTGACAAAAAGGAGACAGCATTTTTAGTTGCAGCAAGAAATGGCATACTGGAAATGGTGAACGCAATTCTATCTCGAATACCAAGTTCTATCCATAATATTAACTCAAAGAAAGAAAATGTATTGCTCGTGGCAGTGAAGAACAGGCAACCCCTTGTTGTTGAGACTTTGAGAAAGTCATTAAAACCAGAACTTTGGAATAATTTAATTCTTGCAGTGGATAATGAGGAAAACACCATGTTGCACTTGGCTGCTGAGGCACTTAGCGGTGATAAGCCTTGGCAGATTGCTGGTTCTGCCTTACAAATGGTGTGGGATATAAAGTGGTTTGAGTATATTAAAAGCCTAGTGCCACAACACTTCTATTTTAGAACCAACAACAGTGGCAAAGCAGCAGGGGAAATCTTCAAGCAATCACATGTAGACCTTATCAAAGACAGTAGTGAATGGCTGAAGGACACATCTGAATCTTGTTCTGTTGTGGCTGCACTTGTTGCTGGTGTTTCCTTTGCTACAGCTAGCGCAGTCCCTGGTGGTACCAATGAAGAAGGTAGACCTACATTAGAAGGCCAGCCAGCATTTGACACATTTGCCATTGCTTCACTGGTTGGACTTTGCTTCTCTGTCACTGGACTCATAATGTTCCTTTCTATTCTCACTTCTCGAAAACAAGCCAAAGATTTTCGAAGAGATTTGCCAATGAAAATTCTTCTGGGCTTGAGCTCTCTCTTCGTGTCCATTGCTGCAATGTTTGTTTCCTTCTGCACTGGCCATTTTTTCCTGATTAATCACAAATACAAGTCTATTCTATTCCCCATTTATGGAGCTACCTGTGTGCCTGTGACTTTCTATGCTATAGCACAGTTTCCACTCTACTTTGATCTTCTAACGGCTATTTTAACCAAGGTGCCAAAGGCAAGTGATACAGGCGACAATTTATAG 2307 0.4148 MSGSDDGNNNILPYITPDEVKDYLAEYTWEGKWEKVKEMYSDFPEAHTTIISESEGTALHVVVDLDEEEVVKELVDAILKYETDVRIEALEMKNERGDTPLHLAASRGFARLCKYIIGDDGKRIYLLCRKNNEGETPLFQAAINWRKQAFAYLADVLKDRVTLLDLIRNDGDSILHSAIKREYFDLAVIIVHYYDFLSTHLNGEEATPLKVLATRPSAFRSASNLSWWKQILYHCILVEPLDPAKAMKSNLKKMEQTPDSDKMKCPENYTTLFEFSKWLSIVTPFGEFLSRKNQPDPEKQSNNEQNNSTSGGRKFLSDQYLVGFLPPIYETVHLFVKSAYVHILGLSGVELKDVKKTKKKHQWSGQLLKALMQRSYAAFTGSGGRPIDKDVEADMYNVFTEWKQGETSKLEWLEEEKPVPSTEKDAKKEEKSEADGKEKPSTGKDTKKENEAGDKIDKKETAFLVAARNGILEMVNAILSRIPSSIHNINSKKENVLLVAVKNRQPLVVETLRKSLKPELWNNLILAVDNEENTMLHLAAEALSGDKPWQIAGSALQMVWDIKWFEYIKSLVPQHFYFRTNNSGKAAGEIFKQSHVDLIKDSSEWLKDTSESCSVVAALVAGVSFATASAVPGGTNEEGRPTLEGQPAFDTFAIASLVGLCFSVTGLIMFLSILTSRKQAKDFRRDLPMKILLGLSSLFVSIAAMFVSFCTGHFFLINHKYKSILFPIYGATCVPVTFYAIAQFPLYFDLLTAILTKVPKASDTGDNL* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00708 768 Gene3D - 18 216 IPR036770 -
Rops9g00708 768 SMART ANK_2a 458 488 IPR002110 GO:0005515
Rops9g00708 768 SMART ANK_2a 170 201 IPR002110 GO:0005515
Rops9g00708 768 SMART ANK_2a 96 126 IPR002110 GO:0005515
Rops9g00708 768 SMART ANK_2a 54 85 IPR002110 GO:0005515
Rops9g00708 768 MobiDBLite consensus disorder prediction 410 453 - -
Rops9g00708 768 SUPERFAMILY Ankyrin repeat 459 541 IPR036770 -
Rops9g00708 768 Gene3D - 400 595 IPR036770 -
Rops9g00708 768 Pfam Domain of unknown function 604 715 IPR026961 -
Rops9g00708 768 ProSiteProfiles Ankyrin repeat region circular profile. 96 117 - -
Rops9g00708 768 MobiDBLite consensus disorder prediction 291 312 - -
Rops9g00708 768 PANTHER CASKIN 54 754 - -
Rops9g00708 768 SUPERFAMILY Ankyrin repeat 27 213 IPR036770 -
Rops9g00708 768 ProSiteProfiles Ankyrin repeat profile. 96 117 IPR002110 GO:0005515
Rops9g00708 768 Pfam Ankyrin repeat 97 118 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00708 Rops-Chr9 10435460 10443172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00708 460 767 Miscellaneous Gene Families AT3G12360 22.472 5.33e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00708 - - psat:127118019 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00708 9 10435460 10443172 Rops9g00708 9 10435460 10443172 ECH