Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00329 ATGGAGGACATGGACGAGATCGATGCCGTTCCTCAGGTTTACATGGCTTGCATACAAAATGGTCATAGAATTGGAGTTTCTTATTATGATTCCAGCCTTCGCCAACTTTATGTGCTTGAAGTTTGGGATGATGGTGACAAAATTTTTCCAGTTATTGATTTGGTGAAATATCAAGCAAACCCTTTGGTCATTTACACAAGCACTAAATGTGATGAGTCCTTCTTGTCTGCTCTGCAAAGAAGTGATGAAGTAGATGAGGCTCCTACCGTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCGTGGCATAGATTAATTTACCTACGGGTGGCAGGGATGGATGATGGATTGAACGTCAAGGAGAGGATTTACTTTTTGAGTTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGTGGTGGCCTTCTTGCAATACTAGAGAACGAAAGGATCGTAGATACTCTTGAGCAAAAAGAATCTGGCAATACATCAATTACAATAGATTCTGTGGCAGAAATTTCACTGTTTTCTGTATTTGGAATGATGAATAAGTGTGTGACTCCAATGGGTAGACGTCTTTTGAGAAACTGGTTCTTGAGGCCTATACTTGATCTTGAAGTTCTAAATTACCGTTTAAATTCTATATCTTTCTTTCTATGCTCAGAAGAACTCGTTGCTTCTTTGCGTGAAACCCTGAAATCTGTGAAGGACATCTCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTCCATATGCACCAGCACTGATTGGACAGCTCTTCTTAAGAGTATTAGTGCACTGTTGCATGTAAACAAGATATTTGAAGTTGGAATTTCTGAAGGTCTTAATGAAGAATTGAAGTACTTGAACTTGGATATTGTTGAGAAGGCAAGTTCCTGCATAACAACAGAGCTTGCTTATGTCTATGAGCTGATAATTGGTGTTATTGATGTAAATAGAACTAAAGAGAAGGGATATGCGACAGTGGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGCTAAGGCAAATATACGAGGAGCTGCCAGAATTCCTGGAAGAGGTTTCATCATTGGAACTTGCACAACTCCCTGTTTTATGCAAGGACAAGCTTGTTCCTTGTATTGTTTATATACAACAAATAGATATGGAGAGGGCGATCACCAGAGACTTATTTTCACGTGTGCTAATGTTCTCAAACCATTTGATAAAGGTGGCAACTTTTGCAGCTGAGCTGGACTGCTTTTTGTCAATGGCATTGGTTGCTCGGCAGAACAATTATGCCAGGCCTTTGTTGACTGAAGAAAACTTGCTCGATATTAAAAATGGAAGGCATGTTTTGCAGGAAATGACTGTAGACACATTTATTCCTAATGACACTAAGATTCCTCACGATGGAAGAATTAATATCATCACTGGTCCTAATTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCTTTAATTGTTTTCCTCTCCCACATTGGTAGTTTTGTGCCAGCTGATGAAGCAACCGTGGGTCTGACAGATAGAATATTTTGTGCAACTGGAAGCAGGCTTATGACAGCAGAACAATCAACTTTTATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCTACTTCGCGATCTCTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGACGGCATTGGTCTGCTAGCTGGGACCATAAATCACTTTGTCACGCCTGATGAACCACCAAAGGTTTTTGTGTGCACTCATCTCATGGATTTATTTCATGGGCGTTCCTTGACCAAGTCTGAACAGATTAAGTTTTACACAATGAGTATACTGAGGCCTGACTACAATTCCACAAATATTGAAGACATTGTATTTTTATATAGGCTTGTCCCCGGGCATGCGCATCATAGCTATGGGCTGCACTGTGCACTGCTTGCAGGTGTGCCTGACGAAATTATAAAAAGAGCAGCAGTTGTGTTGGATGCTGTTTCAAATCACAATTGTGTCGAGCGGTTATGCAATGAGAACATCTCAGCTCGAGATCATCAATACAAGGATGCCATGGAGAAGTTGTTGGAATTCGATATTGACAATGGCGACTTAAACCTTTTTTTCGAGGATATATTCTCTCTAGTTCCTATAGCATCATGA 2163 0.4031 MEDMDEIDAVPQVYMACIQNGHRIGVSYYDSSLRQLYVLEVWDDGDKIFPVIDLVKYQANPLVIYTSTKCDESFLSALQRSDEVDEAPTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLNVKERIYFLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSVAEISLFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVASLRETLKSVKDISHLLKKFDSPSSICTSTDWTALLKSISALLHVNKIFEVGISEGLNEELKYLNLDIVEKASSCITTELAYVYELIIGVIDVNRTKEKGYATVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPVLCKDKLVPCIVYIQQIDMERAITRDLFSRVLMFSNHLIKVATFAAELDCFLSMALVARQNNYARPLLTEENLLDIKNGRHVLQEMTVDTFIPNDTKIPHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGSFVPADEATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVTPDEPPKVFVCTHLMDLFHGRSLTKSEQIKFYTMSILRPDYNSTNIEDIVFLYRLVPGHAHHSYGLHCALLAGVPDEIIKRAAVVLDAVSNHNCVERLCNENISARDHQYKDAMEKLLEFDIDNGDLNLFFEDIFSLVPIAS* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00329 720 Gene3D - 432 702 IPR027417 -
Rops9g00329 720 SMART DNAend 177 455 IPR007696 GO:0005524|GO:0006298|GO:0030983
Rops9g00329 720 Pfam MutS domain V 474 665 IPR000432 GO:0005524|GO:0006298|GO:0030983
Rops9g00329 720 SMART mutATP5 470 665 IPR000432 GO:0005524|GO:0006298|GO:0030983
Rops9g00329 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 667 IPR027417 -
Rops9g00329 720 FunFam DNA mismatch repair protein MSH5 432 698 - -
Rops9g00329 720 SUPERFAMILY DNA repair protein MutS, domain III 180 430 IPR036187 -
Rops9g00329 720 PIRSF Msh6 381 706 IPR017261 GO:0006298|GO:0030983
Rops9g00329 720 PIRSF Msh6 2 367 IPR017261 GO:0006298|GO:0030983
Rops9g00329 720 ProSitePatterns DNA mismatch repair proteins mutS family signature. 550 566 IPR000432 GO:0005524|GO:0006298|GO:0030983
Rops9g00329 720 Gene3D - 147 431 - -
Rops9g00329 720 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 75 680 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Rops9g00329 720 CDD ABC_MSH5_euk 443 652 - -
Rops9g00329 720 Pfam MutS domain III 181 423 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00329 K08741 - gmx:100797567 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00329 9 4081040 4095508 Rops9g00329 9 4081040 4095508 ECH