Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00304 ATGAAGAAAGACAAAGTTCAAAAGAACATATGTTCTTTGACACTGTGCCTTGCTTTACTTTCTTTCATCACAATCTTCCTTCCCTTCTGTGAGTCCTTCAACTATGGCCAAGCCCTGTCACAGAGCCTCCTCTACTTCGAGTCACAGCGTTCAGGTCGCTTACCCCACAATCAAAGGGTCACTTGGCGTCACCATTCTGCCCTCACTGATGGCCTAGAACAAGGGGTGGACTTGGTGGGAGGCTATTATGATGCAGGTGACAATGTGAAATTTGGGTTACCAATGGCATTCACCGTAACTTTGCTCTCTTGGGCTGCCATAGAATACGGCGAACAAATCGCCGGTGCCGGCGAGTATGTTCACGCGCTTGAAGCCATCAAGTGGGGGACCGATTATTTCATCAAGGCACACTCACAACCAAACGTTCTATGGGTAGAGGTGGGTGATGGTGACACTGATCACTACTGTTGGCAGCGGCCGGAGGACATGACAACGTCACGGCGAGCTTACAAGGTTGACGTGAACAACCCCGGCTCCGATATCACCGGCGAGACGGCTGCAGCGTTGGCAGCAGCGTCCATTTTGTTTAGGAGAACAAACCCACATTACTCTCAACTACTCTTGCATCATGCCCAACAGTTGTTTGAGTTTGGTGACAAGTTCAAGGGCAAGTATGATGATAGTGTTGGAGTGGCTAAAAGGTATTATGCTTCTGTTAGTGGGTACATGGATGAGTTGCTGTGGGCAGCCATTTGGCTCTATAGGGCCACACAAAATGAGGAATATTTGAACTATTTTTTGGAGAAGGCTAATGACTTTGGTGGGACCACTTGGGCCATGACTGAATTTAGCTGGGATGTTAAGTATGCTGGTGTTCAAGCCATTGCTTCAATGCTTCTTATGGAAGAAAAGCACAAGAAACACGAAGTCATACTAAAACAGTATCGTTCAAAAGTAGAGCACTACCTATGCGCGTGCCTAAACCTCAACAACGTGAGCAACGTGGAACGCACCCCAGGAGGGTTACTATATGTCCGCCAGTGGAACAACATGCAATACGTAGCAACGGCGTCGTTTCTTCTCACTGTGTACTCTGATCATCTCCTAGCCACAGATCAGAACCTGCATTGCCCAAAAGGTGATGTGGGTCCCCATGAACTCTTTGCCTTTGCAAAATCACAGGTTGATTACATCTTGGGTTCTAATCCAATGGGTATGAGCTACTTGGTAGGCTATGGTCCCAATTTCCCACAGAGGGTGCACCATAGAGGGGCATCCATTGAATCATATAGAGGGAACAAGGGTTTTATTGGGTGCACTCAGGGTTATGATAATTGGTATGGAAGGCCAGAGCCCAACCCAAACATTCTCATTGGGGCCCTTGTTGGTGGGCCAGATAGCAAGGACAAATTTAAAGATGATAGAAGGAATTACATTCAGACCGAGGCTTGTACCTACAATACTGCAGCACTAGTAGGAGTTTTTGCAAGATTGCATGGATCAAAAGGTGATTTTTATGATGGTGAAACACCTTTGGTTGCTTCTAGCTAA 1551 0.4687 MKKDKVQKNICSLTLCLALLSFITIFLPFCESFNYGQALSQSLLYFESQRSGRLPHNQRVTWRHHSALTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTVTLLSWAAIEYGEQIAGAGEYVHALEAIKWGTDYFIKAHSQPNVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDVNNPGSDITGETAAALAAASILFRRTNPHYSQLLLHHAQQLFEFGDKFKGKYDDSVGVAKRYYASVSGYMDELLWAAIWLYRATQNEEYLNYFLEKANDFGGTTWAMTEFSWDVKYAGVQAIASMLLMEEKHKKHEVILKQYRSKVEHYLCACLNLNNVSNVERTPGGLLYVRQWNNMQYVATASFLLTVYSDHLLATDQNLHCPKGDVGPHELFAFAKSQVDYILGSNPMGMSYLVGYGPNFPQRVHHRGASIESYRGNKGFIGCTQGYDNWYGRPEPNPNILIGALVGGPDSKDKFKDDRRNYIQTEACTYNTAALVGVFARLHGSKGDFYDGETPLVASS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00304 516 SUPERFAMILY Six-hairpin glycosidases 32 502 IPR008928 GO:0005975
Rops9g00304 516 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 397 423 IPR018221 -
Rops9g00304 516 PANTHER ENDO-1,4-BETA-GLUCANASE 15 501 - -
Rops9g00304 516 Gene3D - 31 501 IPR012341 GO:0005975
Rops9g00304 516 FunFam Endoglucanase 31 503 - -
Rops9g00304 516 Pfam Glycosyl hydrolase family 9 35 494 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00304 Rops-Chr9 3869323 3871899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00304 19 497 Glycoside Hydrolase AT2G32990 73.415 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00304 - - gmx:100802346 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00304 9 3869323 3871899 Rops9g00304 9 3869323 3871899 ECH