Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00301 ATGGAGTTCGACCCGATTCCAATCGGTTCGTGCTCCAAAGAGAACCAAACTATCTACCAAGAGTGGTTCAATTACGCAGATTCAGATGGCGATGGCCGCATTACAGGGAGTGATGCCACCAAGTTATTCACCATGTCCAATTTGTCTCGCCAAGATCTTAAGCAGGTGTGGGCTACTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCCAAGAGTTCATCATTGCTATGCAGCTAGTTTCTTTGGCACAATCTGGGCACCCGATAACACATGATCTGCTGAGTAGTGCTGTTGATCTGAAAAATCTTAAACCTCCCACAATGGAGGGTTTGGATGTACTACTAGTTAAGAAAAAGCATAAACATAAAGAGGTTGATGCGAATGGTAGTTCTCAATTGCAGCCATCACTATCACTATCAAGTAATTGGTTTTCTTCGAAGTCAACAAAAAAGGTTCCTCTTTCCTCTGTAACATCAATAATTGATGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCGTTAGAAGCTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGCGATTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTACTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCGACAACCGATAGGTTTGTTGTTGTCATGTCTGGACCTGATGAGAGAAGCATTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCTTTTTTGTCAAAATTTGAGTGTTCACAAATGCCTCATCCTCTACTGGAGCACATTACATTTGTGGACAGTCCTGGAGTTCTATCTGGAGAAAAGCAACGGACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTTCTAAATGTGATTTGATTCTCCTCCTGTTTGATCCTCACAAACTTGATATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGCCATGACGACAAAATTCGAGTGGTTTTGAACAAGGCCGACCAAATTGGTACTCAGCAACTGATGAGGGTTTATGGAGCATTGATGTGGTCACTTGGGAAGGTGCTGAATACACCTGAAGTCATTCGTGTGTATATTGGCTCCTTCAACGACAAGCCTGTAGATGATTCCGTCAGTGGTCCAATCGGTAAGGAACTCTTTGAAAAAGAACAGGAAGACCTTCTTTCAGACCTGAAAGATATACCAAAGGCGGCTTGTGATCGAAGAATCAATGAATTTGTAAAACGAGCCCGAGCAGTCAAGATACATGCTTATATTATCAGTCATCTTAAAAAGGAGATGCCTGCTATGATGGGCAAAACTAAAGCTCAGCAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGGAAGGTACAAAGGGAGTTCCATTTACCTCCTGGTGACTTCCCAAATGTTGAGCATTTCAGAGAGACCTTGCGTGGTTACAATATTGACAAGTTTGAGAAATTGAAACCAAAAATGATACAAGCAGTTGATGACATGCTAGGTTACGACATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTATGATTAA 1638 0.4133 MEFDPIPIGSCSKENQTIYQEWFNYADSDGDGRITGSDATKLFTMSNLSRQDLKQVWATADSKRQGYLGFQEFIIAMQLVSLAQSGHPITHDLLSSAVDLKNLKPPTMEGLDVLLVKKKHKHKEVDANGSSQLQPSLSLSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFASKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQIGTQQLMRVYGALMWSLGKVLNTPEVIRVYIGSFNDKPVDDSVSGPIGKELFEKEQEDLLSDLKDIPKAACDRRINEFVKRARAVKIHAYIISHLKKEMPAMMGKTKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEHFRETLRGYNIDKFEKLKPKMIQAVDDMLGYDIPNLLKNFRNPYD* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00301 545 FunFam EH domain-containing protein 1 200 428 - -
Rops9g00301 545 Gene3D - 200 428 IPR027417 -
Rops9g00301 545 SUPERFAMILY EF-hand 12 88 IPR011992 -
Rops9g00301 545 Pfam Domain of unknown function (DUF5600) 435 536 IPR040990 -
Rops9g00301 545 PANTHER EH DOMAIN 14 542 - -
Rops9g00301 545 CDD EH 19 85 IPR000261 GO:0005515
Rops9g00301 545 SMART eh_3 8 103 IPR000261 GO:0005515
Rops9g00301 545 SMART efh_1 18 46 IPR002048 GO:0005509
Rops9g00301 545 SMART efh_1 52 80 IPR002048 GO:0005509
Rops9g00301 545 ProSiteProfiles EH domain profile. 15 104 IPR000261 GO:0005515
Rops9g00301 545 Gene3D - 10 109 - -
Rops9g00301 545 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Rops9g00301 545 Pfam N-terminal EH-domain containing protein 163 195 IPR031692 -
Rops9g00301 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 467 IPR027417 -
Rops9g00301 545 CDD EHD 199 443 - -
Rops9g00301 545 Gene3D - 164 536 - -
Rops9g00301 545 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 194 430 IPR030381 GO:0005525
Rops9g00301 545 Pfam Cytoskeletal-regulatory complex EF hand 20 80 IPR000261 GO:0005515
Rops9g00301 545 Pfam Dynamin family 200 359 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00301 Rops-Chr9 3813736 3819082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00301 1 545 EF-hand Containing Proteins AT3G20290 83.486 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00301 K12483 - gmx:100804468 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00301 9 3813736 3819082 Rops9g00301 9 3813736 3819082 ECH