Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00300 ATGTTGGTTTATAAGGTTTTGTCGCGTGTCTCAAGGACTATTTGCCGAAGCTCCGTTCTCTCTGTTTCGCAAAGGCCCCAACATTTCCTCACCTTCTCCAATCACTTCCATTCCCTCCTTTCCCAATCACCCAACAAGCTGATTCCAGTTCAAGTCAATTTGTTATGTCCACCAATAAATTCCTCAACTCCAAGATTTGGATTTTCTTCATCAACCTCAACTGAAACTAATGAAAAGGAAAAAGGGAATAATGAGCATAATGACGATTCTACAAATGATGACCTGGCAAAAACAAGTGAAGAGGCAAAGAAAATTGATCAAGCTGGACAAGCTAAACCTGCAGATCAAACAGAAGAATCAAGTTCTATTTCAGATTCTCAATCTCAAACTGTCAAGAAAAGGAGGAGAGGTGTTAAACGAACTGCATTTTCTGATTCAGATTCAGAGAGTGAATGTGATCTGTCCAGGGATGATTTAATTAAGATTGTAGCTGAGAAGGAAGAACTACTGAAGTTAAAGCACCAAGAGATTGAGAAAATGAAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGACAGGACTAGACGTGAAGCAGAGAATTCAAAAAAATTTGCGATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCTGACAATCTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGTTTTTCAAAAATTGATACGCCGAGTGACTCTGCTGAAGAAGTAAAACTCCTGAAAACACTTCTGGAGGGTGTTGAAATGACTGAGAAACAACTCTCAGAGGTACTTAAAAAGTTCGGTGTAGAAAAATTTGACCCGACAAATGAGCCCTTTGATCCACATAGGCATAATGCCATCTTCCAAATCCCTGATAGTTCCAAGCCTCCAGGCACTGTTGCGGCTGTTCTGAAGGCAGGATATTTGCTTCATGATCGTGTTATTCGTCCAGCGGAAGTTGGTGTAACCCAAGCAGTAGAAGATAACAATCCAACAGAATGA 1017 0.4022 MLVYKVLSRVSRTICRSSVLSVSQRPQHFLTFSNHFHSLLSQSPNKLIPVQVNLLCPPINSSTPRFGFSSSTSTETNEKEKGNNEHNDDSTNDDLAKTSEEAKKIDQAGQAKPADQTEESSSISDSQSQTVKKRRRGVKRTAFSDSDSESECDLSRDDLIKIVAEKEELLKLKHQEIEKMKDKVLRTYAEMENVMDRTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDTPSDSAEEVKLLKTLLEGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDSSKPPGTVAAVLKAGYLLHDRVIRPAEVGVTQAVEDNNPTE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00300 338 Gene3D - 160 272 IPR013805 -
Rops9g00300 338 Coils Coil 163 201 - -
Rops9g00300 338 ProSitePatterns grpE protein signature. 284 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 CDD GrpE 178 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 Hamap Protein GrpE [grpE]. 93 329 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 PANTHER GRPE PROTEIN 67 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 Gene3D Head domain of nucleotide exchange factor GrpE 273 328 IPR009012 GO:0006457
Rops9g00300 338 FunFam GrpE protein homolog 157 272 - -
Rops9g00300 338 Pfam GrpE 162 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 165 273 IPR013805 -
Rops9g00300 338 FunFam GrpE protein homolog 273 329 - -
Rops9g00300 338 PRINTS GrpE protein signature 185 201 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 PRINTS GrpE protein signature 281 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 PRINTS GrpE protein signature 308 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Rops9g00300 338 MobiDBLite consensus disorder prediction 65 151 - -
Rops9g00300 338 MobiDBLite consensus disorder prediction 113 128 - -
Rops9g00300 338 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 274 329 IPR009012 GO:0006457
Rops9g00300 338 MobiDBLite consensus disorder prediction 78 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00300 Rops-Chr9 3804100 3808083 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00300 K03687 - gmx:100803396 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00300 9 3804100 3808083 Rops9g00300 9 3804100 3808083 ECH