Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00295 ATGGCCATGGAACTGTGTACTCGAACCTTCAAAAGTGTTAACCTTTTCAACCCTTCTTTCTCTGTCCCCTCTTCAAATTCTCTTCTTCTTCGTGCCAACACTAGACCCTTCAAATTCAATTCCTTGAAGCTCTCTTCTTTCACTCCCCACATTCACCTCTTTCAACCCTTTTTCCATCATCACACTTCTTCTCCCTTCACAGTCTCAGCTTCTTCTTCTTCAGTGGCACATGGCACAGAAAAGGACCGTCTTCCAGCAGAATTGAAGGTCACTGAAACAGAGGAACCCAATTCCAGAGTTAGATTGCATGTGGAGGTGCCACCACTGGTATGTGAGGAATGTTACAAAATGGTCATAGTTGAGTTTACAAAGCAAGCAAAGATCCCTGGATTTCGCCCTGGAAAGAAGGTTCCAGAAAGCATTCTTGTTAATTATGTCGGGAGTAAAAATGTCCAGAAGGCTACGATTGAATCTATATTGAAGAGGACACTTTCACATGCTATGACATCAGTTACTGGAAGGGCTTTGCAGGACTCAGTACGTATAGTGACCAAATTTTCTGAGATGGAGGAGACATATTCTTCTCTTGGGTATCTTAGATATGATGTCATTGCTGATATTGCACCAGAAATCAAATGGATTTCTGATGATGCATACAAAAATTTGAAGATTGTTGTTGAGATAGACAGTGATATAGATGCTCACAGAGCATCTGAACAAGAATTTAGAAGGCGTTACAAGGCTATTGGTGCACTGAAAGTTGTTACTGACAGAGGGCTACAGGTTGGTGATGTTGTTGTCCTTGACATCTCAGCAACAACCATTGACCAAGATGAATCAAATATTAAAAGTATTCCTTCTGCTGAAAGTAAAGGATTTAATTTTGATACAGAAGATGGTAACAAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTTGTCGAGGTGAGACAAAGTCATTTCCTCTTGTATTTCCTGAAACATGGAAGCAAGAAAATCTTCGTGGTGTTCAAGCTCAGTTTACCGTTGAGTGCAAAGAACTTTTTTACAGAGATTTACCAGAGCTGGATGACTCTATTGCTGATAAGCTTATCCCTGGATGCACCACAGTGGAGCAGGTCAAAGACTTATTGTTACAGAGATGCCTAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGACCAGCTTTCGAAGATGGTAGAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAATCTATTAGAAATACAGGCAAAAGTAAAACTAAATGAGCAGCAGCTGGCATCTCTATCAAGTCCAAAGGCTGTGAATGAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAAAATCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGCTTTCTACTGGAGACATCGTCAAAGAGGTTGAGAATTCTATTGCTGAATTCAAACGTCAAAAACAAGAATATGATGAGGAACGGGTGAAGGATCAGGTTCAAGAAATACTAGAAGGAGCTAAGGTGCTTGAATGGTTGAGAGAACATGCAGAGATTCAGTATATAACAAGATGA 1620 0.3994 MAMELCTRTFKSVNLFNPSFSVPSSNSLLLRANTRPFKFNSLKLSSFTPHIHLFQPFFHHHTSSPFTVSASSSSVAHGTEKDRLPAELKVTETEEPNSRVRLHVEVPPLVCEECYKMVIVEFTKQAKIPGFRPGKKVPESILVNYVGSKNVQKATIESILKRTLSHAMTSVTGRALQDSVRIVTKFSEMEETYSSLGYLRYDVIADIAPEIKWISDDAYKNLKIVVEIDSDIDAHRASEQEFRRRYKAIGALKVVTDRGLQVGDVVVLDISATTIDQDESNIKSIPSAESKGFNFDTEDGNKVLPGFLDSIIGICRGETKSFPLVFPETWKQENLRGVQAQFTVECKELFYRDLPELDDSIADKLIPGCTTVEQVKDLLLQRCLEVEQTAREQATDNAILDQLSKMVEVDIPQSLFEEQGRQLYGANLLEIQAKVKLNEQQLASLSSPKAVNEYLEHQKENITNLIKQNLAVGDIYRRENLQLSTGDIVKEVENSIAEFKRQKQEYDEERVKDQVQEILEGAKVLEWLREHAEIQYITR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00295 539 Gene3D - 86 211 IPR036611 GO:0006457|GO:0015031
Rops9g00295 539 FunFam Trigger factor 88 211 - -
Rops9g00295 539 SUPERFAMILY Trigger factor ribosome-binding domain 88 221 IPR036611 GO:0006457|GO:0015031
Rops9g00295 539 Hamap Trigger factor [tig]. 88 535 IPR005215 GO:0015031
Rops9g00295 539 Gene3D - 219 534 IPR037041 GO:0006457|GO:0015031
Rops9g00295 539 Pfam Bacterial trigger factor protein (TF) 89 227 IPR008881 GO:0006457|GO:0015031
Rops9g00295 539 SUPERFAMILY FKBP-like 253 358 - -
Rops9g00295 539 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 46 521 IPR005215 GO:0015031
Rops9g00295 539 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 357 535 IPR027304 -
Rops9g00295 539 FunFam Chloroplast trigger factor 325 534 - -
Rops9g00295 539 Coils Coil 489 509 - -
Rops9g00295 539 FunFam Trigger factor 253 355 - -
Rops9g00295 539 Pfam Bacterial trigger factor protein (TF) C-terminus 371 528 IPR008880 GO:0006457|GO:0015031
Rops9g00295 539 Gene3D - 248 355 IPR046357 GO:0003755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00295 K03545 - gmx:100805543 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00295 9 3673187 3679253 Rops9g00295 9 3673187 3679253 ECH