Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00292 ATGGCGAACGAGAACGAACCCGCGAAGCTGCTCTTACCGTATCTTCAACGCGCCGATGAATTGCAAAAGCACGAACCTCTCGTCGCTTATTACTGTCGATTATATGCGATGGAACGGGGGTTGAAGATTCCACAGAATGAACGCACCAAGACCACTAATGCTCTTCTTGTTTCGCTCATGAAGCAACTCGAAAAGGATAAAAAGTCAATCCAGTTGGGGCCTGAAGATAATTTATATCTTGAGGGATTTGCTTTGAATGTGTTTGGAAAAGCAGACAAGCAAGATCGTGCTGGAAGAGCAGATTTGAGTACGGCAAAAACATTTTATGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTTGGAGAAATTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGCATGGAAAGCAGCTGATATAAGAAAAGCTTTAAAAGAAGGAAGGAAGCCCACAGCTGGCCCACCTGCTGATGATGAGGATCTGTCAGTTCCATTTAGTACTTCTAGTAATGGATATGATCTTGGGACTACCGAAACTACTATTACCAGTCCTGGACCAGAATCTGATTCAACACATAGTTATCATAACCCTGTCAACAACCAGAATCTTCCAAGCATTCATCCTGCGCCTAAATTTCATGATACTGTTAACGATCAGCATTCTGCAAACATTCCACCATCTATGCAGTTTCATGATAGAGTAGATGATAATAAGCATTCTTCCTTTGTTTCTCCATCATCTCACTCTTACACACCTGCAGTTTATCATTCCCAAGATTACCATCCTCCTCCACCTTCTCAAGATTACCATCCTCCTCCACCCTCCCAAGATTACCATCCTCCTCCTCCTCCTTCCCAAGATTACCAGCATCCTCCTCCACCTTCCGAAGATTACCATCCTCCTCCTCCTTCCCAAGATTACCAGCATCCTCCTCCTTCCCAAGATTACCAGCATCCTCCTCCACCTTCCCAAGATTACCAGCATCCTCTTCCTTCCCAAGATTACCATCCTCCTCCTCCTTCCCAGCATTTAGGTTCTAGCTACCCTTCTCATGAAACTCCCTCTTTTTCTTATCCCCATTTTCAATCTTATCCAAGTTTTACAGAAAGCAGCCTACCATCAGTCCCACCAAACTATACTTATTATCAAGGGTCTGATGCTTCATATTCTTCCCAGTCAGCTCCACTAACTACGAACTACTCATCAAGTGCCCAAAACAGTTCCAGCAGCAGAAATGGAACTGTCTCAGAACCTAAGCCAAGTACTCAGACATACCAGTATGACAGTAGCTACCAACCAGCACCTGAAAAAATAGCAGAGGCACACAAGGCCGCAAGATTTGCCGTTGGGGCACTGGCATTTGATGATGTCTCAGTTGCAGTAGATTTCTTGAGGAAATCACTTGAGTTGCTGACAAATCCATCGGCTGGCCAGTAA 1443 0.4421 MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQNERTKTTNALLVSLMKQLEKDKKSIQLGPEDNLYLEGFALNVFGKADKQDRAGRADLSTAKTFYAASIFFEILNQFGEIQPDLEQKQKYAAWKAADIRKALKEGRKPTAGPPADDEDLSVPFSTSSNGYDLGTTETTITSPGPESDSTHSYHNPVNNQNLPSIHPAPKFHDTVNDQHSANIPPSMQFHDRVDDNKHSSFVSPSSHSYTPAVYHSQDYHPPPPSQDYHPPPPSQDYHPPPPPSQDYQHPPPPSEDYHPPPPSQDYQHPPPSQDYQHPPPPSQDYQHPLPSQDYHPPPPSQHLGSSYPSHETPSFSYPHFQSYPSFTESSLPSVPPNYTYYQGSDASYSSQSAPLTTNYSSSAQNSSSSRNGTVSEPKPSTQTYQYDSSYQPAPEKIAEAHKAARFAVGALAFDDVSVAVDFLRKSLELLTNPSAGQ* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00292 480 MobiDBLite consensus disorder prediction 266 346 - -
Rops9g00292 480 Gene3D - 4 152 IPR023175 -
Rops9g00292 480 Pfam Vta1 like 13 148 IPR039431 -
Rops9g00292 480 MobiDBLite consensus disorder prediction 242 256 - -
Rops9g00292 480 MobiDBLite consensus disorder prediction 148 435 - -
Rops9g00292 480 Gene3D Immunoglobulin FC, subunit C 436 475 - -
Rops9g00292 480 MobiDBLite consensus disorder prediction 164 208 - -
Rops9g00292 480 MobiDBLite consensus disorder prediction 347 433 - -
Rops9g00292 480 Pfam Vta1 C-terminal domain 437 474 IPR041212 -
Rops9g00292 480 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 303 476 IPR044538 GO:0032511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00292 Rops-Chr9 3641388 3644260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00292 1 129 Glycosyltransferase AT2G31960 25.362 9.30e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00292 K12199 - gmx:100806599 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00292 9 3641388 3644260 Rops9g00292 9 3641388 3644260 ECH