Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00277 ATGCCAGACCAAGAGATTTGCAGTTACCTTAAAGAACCTCGTCTTGTGGCAAGGAAGTTCTTGGCCAAACCTCAACATGAAGGTGTTGGAGCTGTTGTTAGAAGAAGCATTGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTTTTGGATGAATTCTCAGTTGCTGCTCCTGCTGGATTTCCTGATCATCCACACAGAGGCTTTGAAACAGTCACATACATGTTGCAGGGAGCTGTAACGCATGAAGATTTTGAAGGACATAAGGGAACAATTGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCTGCTCAAGGAACCCAAAAGGGTCTACAACTTTGGATCAACCTTGCTTCCCAACATAAAATGATTGAACCAAGGTATCAAGAAATGTTGAGCAAGGACATAGGAGAAGCTGTGAAAGATGGTATCAAGGTTAGAGTTATAGCAGGGGAAGCTCTTGGGATCAAGTCTCCAATTTACACAAGGACCCCAACTATGTACTTGGACTTTTCTCTTAAACCAGGAGCACACTTGCAACAACTTGTACCAAAATCATGGAATGCTTTTGTGTATATCTTGGAAGGAGAGGGTGTCTTTGGAAACCAAAAATCTCAGCCTGTGACACCTCATCATATTCTTCTTCTTGGTTCTGGGGATGGACTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATTTTGGTTGGAGGTGAACCATTGGGTGAACCTGTGATGCAATTTGGACCCTTTGTGATGAATACTCAAGAAGAGATTGACCAAACCATTGATGATTTTGAGAACTATGCCAATGGATTTGAGAAAGCAAGACATTGGAGGTCTGAGAGTGCAGTTAATCTTGATTTTTGA 906 0.4249 MPDQEICSYLKEPRLVARKFLAKPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASQHKMIEPRYQEMLSKDIGEAVKDGIKVRVIAGEALGIKSPIYTRTPTMYLDFSLKPGAHLQQLVPKSWNAFVYILEGEGVFGNQKSQPVTPHHILLLGSGDGLEAWNKSSKLLRFILVGGEPLGEPVMQFGPFVMNTQEEIDQTIDDFENYANGFEKARHWRSESAVNLDF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00277 301 FunFam pirin 27 165 - -
Rops9g00277 301 CDD cupin_pirin_C 176 252 - -
Rops9g00277 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Rops9g00277 301 CDD cupin_pirin_N 31 128 - -
Rops9g00277 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Rops9g00277 301 Pfam Pirin C-terminal cupin domain 179 282 IPR008778 -
Rops9g00277 301 PIRSF Pirin 12 292 IPR012093 -
Rops9g00277 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Rops9g00277 301 Pfam Pirin 33 126 IPR003829 -
Rops9g00277 301 PANTHER PIRIN-RELATED 10 295 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00277 Rops-Chr9 3438559 3441373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00277 13 289 Calmodulin-binding Proteins AT3G59220 59.857 8.67e-126 358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00277 9 3438559 3441373 Rops9g00277 9 3438559 3441373 ECH
Rops11g02687 11 46314515 46317810 Rops9g00277 9 3438559 3441373 PCT